7WG5 | pdb_00007wg5

Cyclic electron transport supercomplex NDH-PSI from Arabidopsis


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth AA]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8106953 4002118 SCOP2 (2022-06-29)
A [auth AA]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8106954 3000850 SCOP2 (2022-06-29)
Q [auth BA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8106954 3000850 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8106956 3000850 SCOP2B (2022-06-29)
R [auth BB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8106956 3000850 SCOP2B (2022-06-29)
C [auth AC]SCOP2 Family7-Fe ferredoxin 8106961 4001227 SCOP2 (2022-06-29)
C [auth AC]SCOP2 Superfamily4Fe-4S ferredoxins 8106962 3000020 SCOP2 (2022-06-29)
S [auth BC]SCOP2B Superfamily4Fe-4S ferredoxins 8106962 3000020 SCOP2B (2022-06-29)
T [auth BD]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8107004 3000951 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8107004 3000951 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyElectron transport accessory proteins 8074494 3000325 SCOP2B (2022-06-29)
U [auth BE]SCOP2B SuperfamilyElectron transport accessory proteins 8074494 3000325 SCOP2B (2022-06-29)
F [auth AF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8107006 3000813 SCOP2B (2022-06-29)
V [auth BF]SCOP2 FamilySubunit III of photosystem I reaction centre, PsaF 8107005 4002091 SCOP2 (2022-06-29)
V [auth BF]SCOP2 SuperfamilySubunit III of photosystem I reaction centre, PsaF 8107006 3000813 SCOP2 (2022-06-29)
H [auth AH]SCOP2B SuperfamilyPhotosystem I reaction centre subunit VI 8107010 3002733 SCOP2B (2022-06-29)
X [auth BH]SCOP2B SuperfamilyPhotosystem I reaction centre subunit VI 8107010 3002733 SCOP2B (2022-06-29)
I [auth AI]SCOP2 FamilySubunit VIII of photosystem I reaction centre, PsaI 8106957 4002098 SCOP2 (2022-06-29)
I [auth AI]SCOP2 SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8106958 3000819 SCOP2 (2022-06-29)
Y [auth BI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8106958 3000819 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8106960 3000824 SCOP2B (2022-06-29)
Z [auth BJ]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8106960 3000824 SCOP2B (2022-06-29)
BA [auth BL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8107008 3000870 SCOP2B (2022-06-29)
L [auth AL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8107008 3000870 SCOP2B (2022-06-29)
CA [auth B1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076986 3000343 SCOP2B (2022-06-29)
M [auth A1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076986 3000343 SCOP2B (2022-06-29)
EA [auth B3]SCOP2 FamilyChlorophyll a-b binding protein 8107011 4001763 SCOP2 (2022-06-29)
EA [auth B3]SCOP2 SuperfamilyChlorophyll a-b binding protein 8107012 3000343 SCOP2 (2022-06-29)
N [auth A3]SCOP2B SuperfamilyChlorophyll a-b binding protein 8107012 3000343 SCOP2B (2022-06-29)
O [auth A4]SCOP2 FamilyChlorophyll a-b binding protein 8106943 4001763 SCOP2 (2022-06-29)
O [auth A4]SCOP2 SuperfamilyChlorophyll a-b binding protein 8106944 3000343 SCOP2 (2022-06-29)
P [auth A6]SCOP2 FamilyChlorophyll a-b binding protein 8106983 4001763 SCOP2 (2022-06-29)
P [auth A6]SCOP2 SuperfamilyChlorophyll a-b binding protein 8106984 3000343 SCOP2 (2022-06-29)
DA [auth B2]SCOP2 FamilyChlorophyll a-b binding protein 8107013 4001763 SCOP2 (2022-06-29)
DA [auth B2]SCOP2 SuperfamilyChlorophyll a-b binding protein 8107014 3000343 SCOP2 (2022-06-29)
FA [auth B5]SCOP2 FamilyChlorophyll a-b binding protein 8106993 4001763 SCOP2 (2022-06-29)
FA [auth B5]SCOP2 SuperfamilyChlorophyll a-b binding protein 8106994 3000343 SCOP2 (2022-06-29)
IA [auth C]SCOP2 FamilyNADH-ubiquinone oxidoreductase chain 3-like 8106949 4005842 SCOP2 (2022-06-29)
IA [auth C]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8106950 3002200 SCOP2 (2022-06-29)
KA [auth E]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8106942 3002200 SCOP2B (2022-06-29)
WA [auth j]SCOP2 FamilyCyclophilin peptidylprolyl isomerase-like 8106989 4000390 SCOP2 (2022-06-29)
WA [auth j]SCOP2 SuperfamilyCyclophilin-like 8106990 3000168 SCOP2 (2022-06-29)
XA [auth H]SCOP2B SuperfamilyHydB/Nqo4-like 8106952 3001849 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AA]e7wg5AA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
Q [auth BA]e7wg5BA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
B [auth AB]e7wg5AB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
R [auth BB]e7wg5BB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
C [auth AC]e7wg5AC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
S [auth BC]e7wg5BC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
T [auth BD]e7wg5BD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
D [auth AD]e7wg5AD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
E [auth AE]e7wg5AE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
U [auth BE]e7wg5BE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
F [auth AF]e7wg5AF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
V [auth BF]e7wg5BF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
G [auth AG]e7wg5AG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT:F:ECOD (20:10:01)
W [auth BG]e7wg5BG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
H [auth AH]e7wg5AH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
X [auth BH]e7wg5BH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
I [auth AI]e7wg5AI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
Y [auth BI]e7wg5BI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
J [auth AJ]e7wg5AJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
Z [auth BJ]e7wg5BJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
AA [auth BK]e7wg5BK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
K [auth AK]e7wg5AK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
BA [auth BL]e7wg5BL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
L [auth AL]e7wg5AL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
CA [auth B1]e7wg5B11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
M [auth A1]e7wg5A11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
EA [auth B3]e7wg5B31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
N [auth A3]e7wg5A31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
O [auth A4]e7wg5A41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
P [auth A6]e7wg5A61 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
DA [auth B2]e7wg5B21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
FA [auth B5]e7wg5B51 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
GA [auth A]e7wg5A1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
HA [auth B]e7wg5B1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
IA [auth C]e7wg5C1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
JA [auth D]e7wg5D1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
KA [auth E]e7wg5E1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
MA [auth G]e7wg5G1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
NA [auth a]e7wg5a1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
OA [auth b]e7wg5b1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
SA [auth f]e7wg5f1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
TA [auth g]e7wg5g1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
UA [auth h]e7wg5h1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
VA [auth i]e7wg5i1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
WA [auth j]e7wg5j1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
XA [auth H]e7wg5H1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
YA [auth I]e7wg5I1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
ZA [auth J]e7wg5J1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
AB [auth K]e7wg5K1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: G-alphaF:ECOD (20:10:01)
EB [auth O]e7wg5O1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)
PA [auth c]e7wg5c1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PhnJF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth AA],
Q [auth BA]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
B [auth AB],
R [auth BB]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C [auth AC],
S [auth BC]
PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
D [auth AD],
T [auth BD]
PF02531PsaD (PsaD)PsaD- Family
E [auth AE],
U [auth BE]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
G [auth AG],
W [auth BG]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
I [auth AI],
Y [auth BI]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
J [auth AJ],
Z [auth BJ]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
AA [auth BK],
K [auth AK]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
BA [auth BL],
L [auth AL]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
CA [auth B1],
M [auth A1]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
EA [auth B3],
N [auth A3]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth A4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth A6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
DA [auth B2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
FA [auth B5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
GA [auth A]PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
IA [auth C]PF00507NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4)NADH-ubiquinone/plastoquinone oxidoreductase, chain 3- Family
IA [auth C]PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain
KA [auth E]PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family
LA [auth F]PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
LA [auth F]PF00361NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M)NADH:quinone oxidoreductase/Mrp antiporter, TMThis entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ...This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N [1]. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction [2].
Domain
LA [auth F]PF01010NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus (Proton_antipo_C)NADH-dehyrogenase subunit F, TMs, (complex I) C-terminusThis entry represents a carboxyl terminal extension of Pfam:PF00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a re ...This entry represents a carboxyl terminal extension of Pfam:PF00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.
Domain
LA [auth F]PF00662NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminusThis entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in ...This entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Domain
MA [auth G]PF00499NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3)NADH-ubiquinone/plastoquinone oxidoreductase chain 6- Family
XA [auth H]PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
YA [auth I]PF131874Fe-4S dicluster domain (Fer4_9)4Fe-4S dicluster domain- Family
YA [auth I]PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomeraseDomain
ZA [auth J]PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunitDomain
ZA [auth J]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
AB [auth K]PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunitDomain
DB [auth N]PF11909NADH-quinone oxidoreductase cyanobacterial subunit N (NdhN)NADH-quinone oxidoreductase cyanobacterial subunit N- Family
CB [auth M]PF10664Cyanobacterial and plastid NDH-1 subunit M (NdhM)Cyanobacterial and plastid NDH-1 subunit MThe proton-pumping NADH:ubiquinone oxidoreductase catalyses the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and ...The proton-pumping NADH:ubiquinone oxidoreductase catalyses the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 sub-complexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit [1]. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms [2]. The three subunits of NDH-1, NdhM, NdhN and NdhO are essential for effecting cyclic electron flow around photosystem I, by supplying extra-ATP for photosynthesis in both plastids and cyanobacteria [3, 4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA],
Q [auth BA]
Photosystem I P700 chlorophyll a apoprotein A1
B [auth AB],
R [auth BB]
Photosystem I P700 chlorophyll a apoprotein A2
C [auth AC],
S [auth BC]
Photosystem I iron-sulfur center
D [auth AD],
T [auth BD]
Photosystem I reaction center subunit II-2, chloroplastic
E [auth AE],
U [auth BE]
Photosystem I reaction center subunit IV A, chloroplastic
F [auth AF],
V [auth BF]
Photosystem I reaction center subunit III, chloroplastic
G [auth AG],
W [auth BG]
Photosystem I reaction center subunit V, chloroplastic-
H [auth AH],
X [auth BH]
Photosystem I reaction center subunit VI-2, chloroplastic-
I [auth AI],
Y [auth BI]
Photosystem I reaction center subunit VIII-
J [auth AJ],
Z [auth BJ]
Photosystem I reaction center subunit IX-
AA [auth BK],
K [auth AK]
Photosystem I reaction center subunit psaK, chloroplastic-
BA [auth BL],
L [auth AL]
Photosystem I reaction center subunit XI, chloroplastic
CA [auth B1],
M [auth A1]
Chlorophyll a-b binding protein 6, chloroplastic
EA [auth B3],
N [auth A3]
Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic
O [auth A4]Chlorophyll a-b binding protein 4, chloroplastic
P [auth A6]Photosystem I chlorophyll a/b-binding protein 6, chloroplastic
DA [auth B2]Photosystem I chlorophyll a/b-binding protein 2, chloroplastic
FA [auth B5]Photosystem I chlorophyll a/b-binding protein 5, chloroplastic
GA [auth A]NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
HA [auth B]NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
IA [auth C]NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
JA [auth D]NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
KA [auth E]NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic
LA [auth F]NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
MA [auth G]NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
NA [auth a]Photosynthetic NDH subunit of subcomplex B 1, chloroplastic-
OA [auth b]Photosynthetic NDH subunit of subcomplex B 2, chloroplastic
QA [auth d]NDH dependent flow 6-
RA [auth e]Photosynthetic NDH subunit of subcomplex B 5, chloroplastic-
SA [auth f]Photosynthetic NDH subunit of lumenal location 1, chloroplastic
TA [auth g]Photosynthetic NDH subunit of lumenal location 2, chloroplastic
UA [auth h]Photosynthetic NDH subunit of lumenal location 3, chloroplastic
VA [auth i]Photosynthetic NDH subunit of lumenal location 4, chloroplastic -
WA [auth j]Isoform 2 of Photosynthetic NDH subunit of lumenal location 5, chloroplastic
XA [auth H]NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
YA [auth I]NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
ZA [auth J]NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
AB [auth K]NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
BB [auth L]NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
EB [auth O]NdhO -
FB [auth T]NdhT---
DB [auth N]NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
CB [auth M]NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
PA [auth c]Photosynthetic NDH subunit of subcomplex B 3, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth AA],
Q [auth BA]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth AA],
Q [auth BA]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth AA],
Q [auth BA]
IPR006243Photosystem I PsaAFamily
A [auth AA],
Q [auth BA]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
B [auth AB],
R [auth BB]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth AB],
R [auth BB]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth AB],
R [auth BB]
IPR006244Photosystem I PsaBFamily
B [auth AB],
R [auth BB]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C [auth AC],
S [auth BC]
IPR017491Photosystem I protein PsaCFamily
C [auth AC],
S [auth BC]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth AC],
S [auth BC]
IPR050157Photosystem I iron-sulfur centerFamily
C [auth AC],
S [auth BC]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
D [auth AD],
T [auth BD]
IPR003685Photosystem I PsaDFamily
D [auth AD],
T [auth BD]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
E [auth AE],
U [auth BE]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth AE],
U [auth BE]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
F [auth AF],
V [auth BF]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F [auth AF],
V [auth BF]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
G [auth AG],
W [auth BG]
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
G [auth AG],
W [auth BG]
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
G [auth AG],
W [auth BG]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
G [auth AG],
W [auth BG]
IPR017494Photosystem I reaction center subunit VFamily
H [auth AH],
X [auth BH]
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
I [auth AI],
Y [auth BI]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
I [auth AI],
Y [auth BI]
IPR001302Photosystem I reaction centre subunit VIIIFamily
J [auth AJ],
Z [auth BJ]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
J [auth AJ],
Z [auth BJ]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
AA [auth BK],
K [auth AK]
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
AA [auth BK],
K [auth AK]
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
AA [auth BK],
K [auth AK]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
AA [auth BK],
K [auth AK]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
AA [auth BK],
K [auth AK]
IPR017493Photosystem I reaction center subunit psaK, plantFamily
BA [auth BL],
L [auth AL]
IPR022980Photosystem I, reaction centre subunit XIFamily
BA [auth BL],
L [auth AL]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
BA [auth BL],
L [auth AL]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
CA [auth B1],
M [auth A1]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
CA [auth B1],
M [auth A1]
IPR022796Chlorophyll A-B binding proteinFamily
EA [auth B3],
N [auth A3]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
EA [auth B3],
N [auth A3]
IPR022796Chlorophyll A-B binding proteinFamily
O [auth A4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth A4]IPR022796Chlorophyll A-B binding proteinFamily
P [auth A6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth A6]IPR022796Chlorophyll A-B binding proteinFamily
DA [auth B2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
DA [auth B2]IPR022796Chlorophyll A-B binding proteinFamily
FA [auth B5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
FA [auth B5]IPR022796Chlorophyll A-B binding proteinFamily
GA [auth A]IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
GA [auth A]IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
HA [auth B]IPR010096NAD(P)H-quinone oxidoreductase, subunit N/subunit 2Family
HA [auth B]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
HA [auth B]IPR045693NAD(P)H-quinone oxidoreductase subunit 2, N-terminalDomain
IA [auth C]IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidFamily
IA [auth C]IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
IA [auth C]IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
JA [auth D]IPR022997NADH-quinone oxidoreductase chain 4Family
JA [auth D]IPR003918NADH:ubiquinone oxidoreductaseFamily
JA [auth D]IPR010227NADH-quinone oxidoreductase, chain M/4Family
JA [auth D]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
KA [auth E]IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
KA [auth E]IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
LA [auth F]IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
LA [auth F]IPR002128NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminalDomain
LA [auth F]IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
LA [auth F]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
LA [auth F]IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
MA [auth G]IPR050290NAD(P)H-quinone oxidoreductase subunit 6, plantFamily
MA [auth G]IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
MA [auth G]IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
NA [auth a]IPR044983Photosynthetic NDH subunit of subcomplex B 1, chloroplasticFamily
OA [auth b]IPR014718Glycoside hydrolase-type carbohydrate-bindingHomologous Superfamily
OA [auth b]IPR011013Galactose mutarotase-like domain superfamilyHomologous Superfamily
QA [auth d]IPR034570Photosynthetic NDH subunit of subcomplex B 4, chloroplasticFamily
RA [auth e]IPR034569Photosynthetic NDH subunit of subcomplex B 5, chloroplasticFamily
SA [auth f]IPR002683PsbP, C-terminalDomain
SA [auth f]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
TA [auth g]IPR008797Oxygen-evolving enhancer protein 3Family
TA [auth g]IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
TA [auth g]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
UA [auth h]IPR008797Oxygen-evolving enhancer protein 3Family
UA [auth h]IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
UA [auth h]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
VA [auth i]IPR046357Peptidyl-prolyl cis-trans isomerase domain superfamilyHomologous Superfamily
VA [auth i]IPR044183Photosynthetic NDH subunit of lumenal location 4/FKBP13-likeFamily
VA [auth i]IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainDomain
WA [auth j]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
WA [auth j]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
WA [auth j]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
XA [auth H]IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
XA [auth H]IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
XA [auth H]IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
XA [auth H]IPR001135NADH-quinone oxidoreductase, subunit DDomain
YA [auth I]IPR004497NAD(P)H-quinone oxidoreductase subunit IFamily
YA [auth I]IPR010226NADH-quinone oxidoreductase, chain IFamily
YA [auth I]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
YA [auth I]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
ZA [auth J]IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
ZA [auth J]IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
ZA [auth J]IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
ZA [auth J]IPR010218NADH dehydrogenase, subunit CFamily
AB [auth K]IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
AB [auth K]IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
BB [auth L]IPR019654NAD(P)H-quinone oxidoreductase subunit LFamily
EB [auth O]IPR020905NAD(P)H-quinone oxidoreductase subunit OFamily
DB [auth N]IPR020874NAD(P)H-quinone oxidoreductase, subunit NFamily
CB [auth M]IPR018922NAD(P)H-quinone oxidoreductase subunit MFamily
PA [auth c]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
PA [auth c]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
PA [auth c]IPR001055Adrenodoxin-likeFamily
PA [auth c]IPR012675Beta-grasp domain superfamilyHomologous Superfamily