7VYL | pdb_00007vyl

Coxsackievirus B3 at pH5.5 (VP3-234Q) incubation with coxsackievirus and adenovirus receptor for 20min


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASybindine7vylA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
BSybindine7vylB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
CSybindine7vylC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
DSybindine7vylD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
ESybindine7vylE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1
Capsid protein VP2
Capsid protein VP3
Capsid protein VP4
Coxsackievirus and adenovirus receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR003599Immunoglobulin domain subtypeDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR052307Epithelial Junction Adhesion RegulatorFamily
IPR003598Immunoglobulin subtype 2Domain