7VY5 | pdb_00007vy5

Coxsackievirus B3 (VP3-234Q) incubation with CD55 at pH7.4


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilySushi/CCP/SCR domain 8044483 3000902 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASybindine7vy5A1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
BSybindine7vy5B1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
CSybindine7vy5C1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
DSybindine7vy5D1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
EPeptidase_M4,Peptidase_M4_Ce7vy5E1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_M4,Peptidase_M4_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00084Sushi repeat (SCR repeat) (Sushi)Sushi repeat (SCR repeat)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1
Capsid protein VP2
Capsid protein VP3
Genome polyprotein
Complement decay-accelerating factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR059138Picornavirus capsid VP1Domain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR000436Sushi/SCR/CCP domainDomain
IPR035976Sushi/SCR/CCP superfamilyHomologous Superfamily
IPR050350Complement & Cell Adhesion RegulatorsFamily