7VPW | pdb_00007vpw

Crystal structure of Transportin-1 in complex with BAP1 PY-NLS (residues 706-724)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	ARM repeat-like	8038551	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	IBN_N	e7vpwA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: IBN_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF03810	Importin-beta N-terminal domain (IBN_N)	Importin-beta N-terminal domain	-	Repeat
B [auth A]	PF13513	HEAT-like repeat (HEAT_EZ)	HEAT-like repeat	-	Repeat
B [auth A]	PF02985	HEAT repeat (HEAT)	HEAT repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A]	Transportin-1	small GTPase binding protein binding binding enzyme binding GTPase binding nuclear import signal receptor activity nucleocytoplasmic carrier activity molecular carrier activity RNA binding nucleic acid binding nuclear localization sequence binding signal sequence binding peptide binding	establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus cellular process intracellular protein localization intracellular protein transport	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen membraneless organelle nuclear lumen extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytoplasm cytosol nucleoplasm
A [auth B]	BRCA1-associated protein 1 (BAP1)	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity chromatin binding binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity cysteine-type deubiquitinase activity deubiquitinase activity DNA binding nucleic acid binding chromatin DNA binding histone H2A deubiquitinase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity chromatin binding binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity cysteine-type deubiquitinase activity deubiquitinase activity DNA binding nucleic acid binding chromatin DNA binding histone H2A deubiquitinase activity histone deubiquitinase activity histone modifying activity	cell population proliferation cellular process leukocyte proliferation regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process cell population proliferation cellular process leukocyte proliferation regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cell cycle mitotic cell cycle macromolecule modification protein metabolic process protein modification process developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development granulocyte differentiation myeloid cell differentiation cell differentiation neutrophil differentiation anatomical structure development leukocyte differentiation regulation of growth regulation of cellular component organization growth regulation of cell growth cell growth cellular component organization cellular component organization or biogenesis protein deubiquitination monoubiquitinated protein deubiquitination protein modification by small protein removal post-translational protein modification protein modification by small protein conjugation or removal regulation of localization establishment of protein localization regulation of protein localization protein targeting regulation of protein targeting to mitochondrion regulation of establishment of protein localization positive regulation of biological process positive regulation of establishment of protein localization establishment of localization regulation of establishment of protein localization to mitochondrion localization establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein targeting to mitochondrion positive regulation of protein targeting to mitochondrion intracellular protein localization establishment of protein localization to mitochondrion positive regulation of establishment of protein localization to mitochondrion multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process regulation of defense response response to stimulus regulation of response to external stimulus defense response regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response anatomical structure morphogenesis platelet morphogenesis cell morphogenesis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process macrophage homeostasis immune system process homeostasis of number of cells myeloid cell homeostasis negative regulation of cell population proliferation regulation of cell population proliferation protein K48-linked deubiquitination hematopoietic stem cell homeostasis cellular component biogenesis cellular component assembly chromatin organization chromatin remodeling heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of gene expression, epigenetic regulation of cytokine production involved in inflammatory response cytokine production regulation of cytokine production regulation of multicellular organismal process production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response myeloid cell apoptotic process apoptotic process cell death programmed cell death anatomical structure homeostasis tissue homeostasis common myeloid progenitor cell proliferation regulation of cell cycle erythrocyte differentiation nucleate erythrocyte differentiation erythrocyte homeostasis thrombocyte differentiation erythrocyte development erythrocyte maturation developmental maturation anatomical structure maturation myeloid cell development cell maturation cellular homeostasis neuron cellular homeostasis	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex intracellular organelle cellular anatomical structure organelle PR-DUB complex cytoplasm cytosol membrane-enclosed lumen membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex intracellular organelle cellular anatomical structure organelle PR-DUB complex cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR040122	Importin beta family	Family
B [auth A]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth A]	IPR001494	Importin-beta, N-terminal domain	Domain
B [auth A]	IPR011989	Armadillo-like helical	Homologous Superfamily
B [auth A]	IPR000357	HEAT repeat	Repeat
A [auth B]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A [auth B]	IPR001578	Peptidase C12, ubiquitin carboxyl-terminal hydrolase	Domain
A [auth B]	IPR041507	Peptidase C12, C-terminal domain	Domain
A [auth B]	IPR036959	Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth A]	Pharos: Q92973	malignant pancreatic neoplasm non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acne pilocytic astrocytoma atopic eczema psoriasis chronic obstructive pulmonary disease subependymal giant cell astrocytoma esophageal adenocarcinoma hepatocellular carcinoma large cell medulloblastoma malignant ependymoma medulloblastoma malignant pancreatic neoplasm non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acne pilocytic astrocytoma atopic eczema psoriasis chronic obstructive pulmonary disease subependymal giant cell astrocytoma esophageal adenocarcinoma hepatocellular carcinoma large cell medulloblastoma malignant ependymoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Alzheimer disease plasma cell myeloma atrial fibrillation rheumatoid arthritis Crohn disease tuberculosis exocrine pancreatic carcinoma invasive ductal breast carcinoma lung cancer malignant glioma myopathy osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease astrocytic tumor primitive neuroectodermal tumor atypical teratoid rhabdoid tumor Sjogren syndrome dermatomyositis ulcerative colitis glioblastoma juvenile dermatomyositis lymphoplasmacytic lymphoma
A [auth B]	Pharos: Q92560	cholangiocarcinoma uveal melanoma BAP1-related tumor predisposition syndrome nasopharyngeal carcinoma thymoma renal cell carcinoma cutaneous melanoma malignant mesothelioma microcystic meningioma lipoma neuroendocrine neoplasm uterine cancer papillary renal cell carcinoma gastric cancer pleomorphic lipoma cholangiocarcinoma uveal melanoma BAP1-related tumor predisposition syndrome nasopharyngeal carcinoma thymoma renal cell carcinoma cutaneous melanoma malignant mesothelioma microcystic meningioma lipoma neuroendocrine neoplasm uterine cancer papillary renal cell carcinoma gastric cancer pleomorphic lipoma melanoma skin basal cell carcinoma intraorbital meningioma meningothelial meningioma spinal meningioma chromophobe renal cell carcinoma transitional meningioma lung adenocarcinoma collecting duct carcinoma urinary bladder cancer malignant colon neoplasm olfactory groove meningioma adrenal cortex carcinoma familial melanoma angiomatous meningioma paraganglioma benign meningioma psammomatous meningioma sarcomatoid renal cell carcinoma meningioma breast carcinoma intraventricular meningioma leukemia mucoepidermoid carcinoma cerebral convexity meningioma thymic carcinoma liver cancer clear cell meningioma fibrous meningioma parasagittal meningioma head and neck cancer prostate cancer renal carcinoma secretory meningioma intrahepatic cholangiocarcinoma Central Nervous System Neoplasms testicular cancer liver neoplasm lung cancer clear cell renal carcinoma malignant choroid melanoma ocular melanoma ovarian neoplasm benign colon neoplasm head and neck neoplasm benign neoplasm of adrenal gland bone cancer inherited disease susceptibility breast cancer kidney neoplasm mixed epithelioid and spindle cell melanoma neoplasm of neck pancreatic neoplasm gastric neoplasm malignant pancreatic neoplasm hereditary diffuse gastric adenocarcinoma skin pigmented basal cell carcinoma mesothelioma central nervous system cancer subependymal giant cell astrocytoma lung benign neoplasm non-small cell lung carcinoma colonic neoplasm urinary bladder neoplasm ovarian cancer adrenal medulla cancer papillary meningioma benign mesothelioma malignant tumor of neck bile duct cancer hibernoma melanocytic neoplasm breast adenocarcinoma cancer kidney cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.