Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
BA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
DA [auth t]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
FA [auth 5]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
HA [auth 3]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
J [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
N [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
P [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
R [auth V]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Z [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
IA [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099398 3000736 SCOP2B (2022-06-29)
JA [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099400 3000736 SCOP2B (2022-06-29)
KA [auth H]SCOP2B SuperfamilyPRC-barrel domain8099396 3000637 SCOP2B (2022-06-29)
KA [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H transmembrane region8100956 3000750 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00556e7voyA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
AA [auth 9]PF00556e7voy91 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
C [auth D]PF00556e7voyD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
CA [auth 4]PF00556e7voy41 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
E [auth F]PF00556e7voyF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
EA [auth 6]PF00556e7voy61 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
G [auth I]PF00556e7voyI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
GA [auth C]PF00556e7voyC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
I [auth K]PF00556e7voyK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
K [auth O]PF00556e7voyO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
M [auth Q]PF00556e7voyQ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
O [auth S]PF00556e7voyS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Q [auth U]PF00556e7voyU1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
S [auth W]PF00556e7voyW1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
U [auth Y]PF00556e7voyY1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
W [auth 1]PF00556e7voy11 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Y [auth 7]PF00556e7voy71 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
BPF00556e7voyB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
BA [auth 0]PF00556e7voy01 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
D [auth E]PF00556e7voyE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
DA [auth t]PF00556e7voyt1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
F [auth G]PF00556e7voyG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
FA [auth 5]PF00556e7voy51 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
H [auth J]PF00556e7voyJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
HA [auth 3]PF00556e7voy31 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
J [auth N]PF00556e7voyN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
L [auth P]PF00556e7voyP1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
N [auth R]PF00556e7voyR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
P [auth T]PF00556e7voyT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
R [auth V]PF00556e7voyV1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
T [auth X]PF00556e7voyX1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
V [auth Z]PF00556e7voyZ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
X [auth 2]PF00556e7voy21 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Z [auth 8]PF00556e7voy81 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
IA [auth L]PF00124e7voyL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
JA [auth M]PF00124e7voyM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
KA [auth H]PF03967,PF05239e7voyH1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PF03967,PF05239ECOD (1.6)
KA [auth H]PF03967e7voyH2 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PF03967ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
IA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
JA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
KA [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
KA [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Light-harvesting protein B-875 alpha chain
Light-harvesting protein B-875 beta chain
IA [auth L]Reaction center protein L chain
JA [auth M]Reaction center protein M chain
KA [auth H]Reaction center protein H chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
IA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
JA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
JA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
JA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
KA [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
KA [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
KA [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
KA [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
KA [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
KA [auth H]IPR027275PRC-barrel domainDomain