7VOX | pdb_00007vox

The crystal structure of human forkhead box protein A in complex with DNA 2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	7tm_1	e7voxH1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (develop294)
G [auth C]	7tm_1	e7voxC1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (develop294)
F [auth B]	7tm_1	e7voxB1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (develop294)
E [auth A]	7tm_1	e7voxA1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth A], F [auth B], G [auth C], H	PF00250	Forkhead domain (Forkhead)	Forkhead domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth A], F [auth B], G [auth C], H	Hepatocyte nuclear factor 3-alpha	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity protein binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity protein binding protein domain specific binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding	developmental process multicellular organismal process epithelium development tube development animal organ development respiratory tube development lung epithelium development tissue development multicellular organism development lung saccule development anatomical structure development lung development respiratory system development alveolar secondary septum development developmental process multicellular organismal process epithelium development tube development animal organ development respiratory tube development lung epithelium development tissue development multicellular organism development lung saccule development anatomical structure development lung development respiratory system development alveolar secondary septum development lung alveolus development system development regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process cellular process apoptotic process programmed cell death positive regulation of cellular process positive regulation of DNA-templated transcription RNA metabolic process positive regulation of miRNA transcription positive regulation of miRNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process positive regulation of metabolic process regulation of RNA metabolic process miRNA transcription positive regulation of biosynthetic process regulation of miRNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of miRNA transcription anatomical structure morphogenesis anatomical structure formation involved in morphogenesis regulation of epithelial to mesenchymal transition regulation of developmental process cellular developmental process negative regulation of biological process regulation of cell differentiation mesenchyme development cell differentiation negative regulation of cellular process negative regulation of cell differentiation regulation of multicellular organismal process negative regulation of developmental process negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation negative regulation of multicellular organismal process epithelial cell differentiation lung epithelial cell differentiation lung cell differentiation neural tube development chordate embryonic development pattern specification process nervous system development embryo development regionalization dorsal/ventral pattern formation embryo development ending in birth or egg hatching dorsal/ventral neural tube patterning neural tube patterning reproductive system development prostate gland development reproductive process gland development morphogenesis of an epithelium urogenital system development developmental process involved in reproduction prostate gland epithelium morphogenesis prostate gland morphogenesis tissue morphogenesis gland morphogenesis reproductive structure development animal organ morphogenesis negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process mesenchymal-epithelial cell signaling signaling mesenchymal-epithelial cell signaling involved in prostate gland development cell-cell signaling cell communication cellular response to stimulus cell surface receptor signaling pathway response to stimulus Notch signaling pathway signal transduction positive regulation of transcription by RNA polymerase II chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis positive regulation of cell adhesion regulation of cell adhesion positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin regulation of cell-cell adhesion regulation of cell-cell adhesion mediated by cadherin neuron fate commitment cell fate specification generation of neurons neurogenesis neuron differentiation neuron fate specification cell fate commitment connective tissue development prostate gland stromal morphogenesis smoothened signaling pathway stem cell differentiation respiratory basal cell differentiation positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of dopaminergic neuron differentiation dopaminergic neuron differentiation positive regulation of dopaminergic neuron differentiation regulation of neuron differentiation regulation of hormone levels regulation of biological quality hormone metabolic process branching morphogenesis of an epithelial tube tube morphogenesis lung morphogenesis epithelial tube morphogenesis morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction positive regulation of response to stimulus positive regulation of smoothened signaling pathway regulation of smoothened signaling pathway regulation of signaling regulation of response to stimulus regulation of cell communication positive regulation of signaling epithelial cell maturation involved in prostate gland development cell development cell maturation epithelial cell differentiation involved in prostate gland development developmental maturation epithelial cell development anatomical structure maturation epithelial cell maturation positive regulation of cell cycle mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle cell cycle regulation of cell cycle intracellular receptor signaling pathway response to lipid positive regulation of intracellular estrogen receptor signaling pathway hormone-mediated signaling pathway intracellular signal transduction cellular response to endogenous stimulus response to hormone regulation of intracellular signal transduction response to steroid hormone regulation of intracellular estrogen receptor signaling pathway regulation of intracellular steroid hormone receptor signaling pathway nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus steroid hormone receptor signaling pathway cellular response to hormone stimulus response to endogenous stimulus positive regulation of intracellular signal transduction estrogen receptor signaling pathway positive regulation of intracellular steroid hormone receptor signaling pathway cellular response to chemical stimulus response to chemical cellular response to lipid nuclear receptor-mediated signaling pathway secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development prostate glandular acinus development glandular epithelial cell differentiation columnar/cuboidal epithelial cell differentiation response to estradiol response to oxygen-containing compound cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome cell projection actin-based cell projection microvillus plasma membrane bounded cell projection membrane-bounded organelle nucleus intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome cell projection actin-based cell projection microvillus plasma membrane bounded cell projection membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nucleolus fibrillar center
B [auth E], D [auth G]	DNA (5'-D(PAPAPAPTPAPTPTPTPAPTPTPAPTPCPGPA)-3')	-	-	-
A [auth D], C [auth F]	DNA (5'-D(PTPCPGPAPTPAPAPTPAPAPAPTPAPTPTPT)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth A], F [auth B], G [auth C], H	IPR013638	Fork-head N-terminal	Domain
E [auth A], F [auth B], G [auth C], H	IPR018122	Fork head domain conserved site1	Conserved Site
E [auth A], F [auth B], G [auth C], H	IPR001766	Fork head domain	Domain
E [auth A], F [auth B], G [auth C], H	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
E [auth A], F [auth B], G [auth C], H	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
E [auth A], F [auth B], G [auth C], H	IPR018533	Forkhead box protein, C-terminal	Domain
E [auth A], F [auth B], G [auth C], H	IPR030456	Fork head domain conserved site 2	Conserved Site
E [auth A], F [auth B], G [auth C], H	IPR050211	Forkhead box domain-containing protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth A], F [auth B], G [auth C], H	Pharos: P55317	breast carcinoma breast cancer prostate cancer Steatohepatitis allergic rhinitis invasive ductal breast carcinoma breast adenocarcinoma breast fibroadenoma fatty liver disease lung adenocarcinoma prostate adenocarcinoma psoriasis ductal breast carcinoma in situ interstitial cystitis lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.