7VNY | pdb_00007vny

Rba sphaeroides WT RC-LH1 monomer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099398 3000736 SCOP2B (2022-06-29)
CA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
EA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
W [auth C]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain 8099396 3000637 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100956 3000750 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099400 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]Peptidase_C30e7vnyL1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
BA [auth 7]Peptidase_C30e7vny71 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
D [auth A]Peptidase_C30e7vnyA1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
DA [auth 9]Peptidase_C30e7vny91 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
F [auth D]Peptidase_C30e7vnyD1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
H [auth F]Peptidase_C30e7vnyF1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
J [auth I]Peptidase_C30e7vnyI1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
L [auth K]Peptidase_C30e7vnyK1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
N [auth O]Peptidase_C30e7vnyO1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
P [auth Q]Peptidase_C30e7vnyQ1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
R [auth S]Peptidase_C30e7vnyS1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
T [auth U]Peptidase_C30e7vnyU1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
X [auth 3]Peptidase_C30e7vny31 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
Z [auth 1]Peptidase_C30e7vny11 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
V [auth W]Peptidase_C30e7vnyW1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
FA [auth X]Peptidase_C30e7vnyX1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
AA [auth 2]Peptidase_C30e7vny21 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
CA [auth 8]Peptidase_C30e7vny81 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
E [auth B]Peptidase_C30e7vnyB1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
EA [auth 0]Peptidase_C30e7vny01 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
G [auth E]Peptidase_C30e7vnyE1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
I [auth G]Peptidase_C30e7vnyG1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
K [auth J]Peptidase_C30e7vnyJ1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
M [auth N]Peptidase_C30e7vnyN1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
O [auth P]Peptidase_C30e7vnyP1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
Q [auth R]Peptidase_C30e7vnyR1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
S [auth T]Peptidase_C30e7vnyT1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
U [auth V]Peptidase_C30e7vnyV1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
W [auth C]Peptidase_C30e7vnyC1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
Y [auth Z]Peptidase_C30e7vnyZ1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
C [auth H]Peptidase_C30e7vnyH1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)
B [auth M]Peptidase_C30e7vnyM1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth A]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
F [auth D]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
H [auth F]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
J [auth I]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
L [auth K]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
N [auth O]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
P [auth Q]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
R [auth S]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
T [auth U]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
Z [auth 1]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
V [auth W]4.10.220.20 Few Secondary Structures Irregular Light-harvesting Protein Light-harvesting complexCATH (utative)
C [auth H]3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center Chain H, domain 2CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
C [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
B [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Reaction center protein L chain
Light-harvesting protein B-875 alpha chain
GA [auth Y]Rsp_7571 Protein-Y PufY- - -
FA [auth X]Intrinsic membrane protein PufX-
Light-harvesting protein B-875 beta chain
C [auth H]Reaction center protein H chain
B [auth M]Reaction center protein M chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
FA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site