Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099398 3000736 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099400 3000736 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain8099396 3000637 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H transmembrane region8100956 3000750 SCOP2B (2022-06-29)
CA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
EA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
W [auth C]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]PF00124e7vnyL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
B [auth M]PF00124e7vnyM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
C [auth H]PF03967,PF05239e7vnyH2 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PF03967,PF05239ECOD (1.6)
C [auth H]PF03967e7vnyH1 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PF03967ECOD (1.6)
BA [auth 7]PF00556e7vny71 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
D [auth A]PF00556e7vnyA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
DA [auth 9]PF00556e7vny91 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
F [auth D]PF00556e7vnyD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
H [auth F]PF00556e7vnyF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
N [auth O]PF00556e7vnyO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
P [auth Q]PF00556e7vnyQ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
R [auth S]PF00556e7vnyS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
T [auth U]PF00556e7vnyU1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Z [auth 1]PF00556e7vny11 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
J [auth I]PF00556e7vnyI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
L [auth K]PF00556e7vnyK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
V [auth W]PF00556e7vnyW1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
X [auth 3]PF00556e7vny31 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
CA [auth 8]PF00556e7vny81 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
E [auth B]PF00556e7vnyB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
EA [auth 0]PF00556e7vny01 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
K [auth J]PF00556e7vnyJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
M [auth N]PF00556e7vnyN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
O [auth P]PF00556e7vnyP1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Q [auth R]PF00556e7vnyR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
S [auth T]PF00556e7vnyT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
U [auth V]PF00556e7vnyV1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
W [auth C]PF00556e7vnyC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Y [auth Z]PF00556e7vnyZ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
AA [auth 2]PF00556e7vny21 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
G [auth E]PF00556e7vnyE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
I [auth G]PF00556e7vnyG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
FA [auth X]PF11511e7vnyX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: PF11511ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
FA [auth X]PF11511Intrinsic membrane protein PufX (RhodobacterPufX)Intrinsic membrane protein PufX- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Reaction center protein L chain
B [auth M]Reaction center protein M chain
C [auth H]Reaction center protein H chain
Light-harvesting protein B-875 alpha chain
Light-harvesting protein B-875 beta chain
FA [auth X]Intrinsic membrane protein PufX-
GA [auth Y]Rsp_7571 Protein-Y PufY- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
FA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily