Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099398 3000736 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099400 3000736 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H transmembrane region8100956 3000750 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain8099396 3000637 SCOP2B (2022-06-29)
AA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Y [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]PF00124e7vnmL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
B [auth M]PF00124e7vnmM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
C [auth H]PF03967,PF05239e7vnmH1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PF03967,PF05239ECOD (1.6)
C [auth H]PF03967e7vnmH2 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PF03967ECOD (1.6)
CA [auth 1]PF00556e7vnm11 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
D [auth A]PF00556e7vnmA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
F [auth D]PF00556e7vnmD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
H [auth F]PF00556e7vnmF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
J [auth I]PF00556e7vnmI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
L [auth K]PF00556e7vnmK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
N [auth O]PF00556e7vnmO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
P [auth Q]PF00556e7vnmQ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
R [auth S]PF00556e7vnmS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
T [auth U]PF00556e7vnmU1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
V [auth W]PF00556e7vnmW1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
X [auth 7]PF00556e7vnm71 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Z [auth 9]PF00556e7vnm91 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
AA [auth 0]PF00556e7vnm01 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
DA [auth 2]PF00556e7vnm21 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
E [auth B]PF00556e7vnmB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
G [auth E]PF00556e7vnmE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
I [auth G]PF00556e7vnmG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
K [auth J]PF00556e7vnmJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
M [auth N]PF00556e7vnmN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
O [auth P]PF00556e7vnmP1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Q [auth R]PF00556e7vnmR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
S [auth T]PF00556e7vnmT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
U [auth V]PF00556e7vnmV1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
W [auth C]PF00556e7vnmC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Y [auth 8]PF00556e7vnm81 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
BA [auth X]PF11511e7vnmX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: PF11511ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
BA [auth X]PF11511Intrinsic membrane protein PufX (RhodobacterPufX)Intrinsic membrane protein PufX- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Reaction center protein L chain
B [auth M]Reaction center protein M chain
C [auth H]Reaction center protein H chain
Light-harvesting protein B-875 alpha chain
Light-harvesting protein B-875 beta chain
BA [auth X]Intrinsic membrane protein PufX-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
BA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily