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7VH1
|
pdb_00007vh1
Cryo-EM structure of Machupo virus dimeric L-Z complex
External Resource: Annotation
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: SCOP2 Classification
SCOP2 Database Homepage
Chains
Type
Family Name
Domain Identifier
Family Identifier
Provenance Source (Version)
B
SCOP2B Superfamily
RING/U-box like
8105485
3000160
SCOP2B (2022-06-29)
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
B
zf-P11
e7vh1B1
A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: RING/U-box
F: zf-P11
ECOD (1.6)
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
B
Maltose/maltodextrin-binding periplasmic protein,RING finger protein Z
transporter activity
carbohydrate transmembrane transporter activity
transmembrane transporter activity
oligosaccharide binding
binding
disaccharide binding
carbohydrate binding
maltose binding
cation binding
transition metal ion binding
zinc ion binding
ion binding
metal ion binding
small molecule binding
transporter activity
carbohydrate transmembrane transporter activity
transmembrane transporter activity
oligosaccharide binding
binding
disaccharide binding
carbohydrate binding
maltose binding
cation binding
transition metal ion binding
zinc ion binding
ion binding
metal ion binding
small molecule binding
RNA binding
nucleic acid binding
Less
cellular response to stimulus
cellular response to stress
response to stimulus
DNA damage response
response to stress
cellular process
cell chemotaxis
chemotaxis
response to external stimulus
cellular response to chemical stimulus
taxis
response to chemical
cell migration
cell motility
cellular response to stimulus
cellular response to stress
response to stimulus
DNA damage response
response to stress
cellular process
cell chemotaxis
chemotaxis
response to external stimulus
cellular response to chemical stimulus
taxis
response to chemical
cell migration
cell motility
locomotion
localization
transport
carbohydrate transport
oligosaccharide transport
disaccharide transport
establishment of localization
maltose transport
polysaccharide localization
dextrin transport
macromolecule localization
maltodextrin transmembrane transport
polysaccharide transport
response to disaccharide
response to oxygen-containing compound
detection of maltose stimulus
detection of stimulus
response to carbohydrate
detection of chemical stimulus
detection of disaccharide stimulus
response to maltose
detection of carbohydrate stimulus
virion assembly
viral process
viral budding
viral budding via host ESCRT complex
viral life cycle
biological process involved in interspecies interaction between organisms
non-lytic viral release
biological process involved in interaction with host
biological process involved in symbiotic interaction
exit from host cell
viral budding from plasma membrane
viral release from host cell
Less
ATPase dependent transmembrane transport complex
protein-containing complex
plasma membrane protein complex
membrane
plasma membrane
membrane protein complex
transporter complex
ATP-binding cassette (ABC) transporter complex
cell periphery
cellular anatomical structure
transmembrane transporter complex
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
maltose transport complex
periplasmic space
ATPase dependent transmembrane transport complex
protein-containing complex
plasma membrane protein complex
membrane
plasma membrane
membrane protein complex
transporter complex
ATP-binding cassette (ABC) transporter complex
cell periphery
cellular anatomical structure
transmembrane transporter complex
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
maltose transport complex
periplasmic space
outer membrane-bounded periplasmic space
cell envelope
virion component
host cell plasma membrane
host cellular component
host cell part
host cell membrane
other organism part
host intracellular part
host cell perinuclear region of cytoplasm
host cell cytoplasm
host intracellular region
host cell cytoplasm part
Less
A
RNA-directed RNA polymerase L
binding
nucleoside phosphate binding
nucleotide binding
heterocyclic compound binding
small molecule binding
RNA-directed RNA polymerase activity
5'-3' RNA polymerase activity
catalytic activity, acting on RNA
catalytic activity, acting on a nucleic acid
RNA polymerase activity
transferase activity
nucleotidyltransferase activity
catalytic activity
transferase activity, transferring phosphorus-containing groups
binding
nucleoside phosphate binding
nucleotide binding
heterocyclic compound binding
small molecule binding
RNA-directed RNA polymerase activity
5'-3' RNA polymerase activity
catalytic activity, acting on RNA
catalytic activity, acting on a nucleic acid
RNA polymerase activity
transferase activity
nucleotidyltransferase activity
catalytic activity
transferase activity, transferring phosphorus-containing groups
hydrolase activity
cation binding
ion binding
metal ion binding
Less
viral gene expression
cap snatching
negative stranded viral RNA transcription
viral process
viral transcription
RNA-templated viral transcription
RNA metabolic process
viral life cycle
primary metabolic process
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
viral gene expression
cap snatching
negative stranded viral RNA transcription
viral process
viral transcription
RNA-templated viral transcription
RNA metabolic process
viral life cycle
primary metabolic process
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
nucleic acid biosynthetic process
negative stranded viral RNA replication
viral genome replication
biosynthetic process
viral RNA genome replication
metabolic process
cellular process
macromolecule metabolic process
Less
virion component
host cellular component
host intracellular part
cellular anatomical structure
host cell cytoplasm
host cell part
host intracellular region
other organism part
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
B
IPR006061
Solute-binding family 1, conserved site
Conserved Site
B
IPR006060
Maltose/Cyclodextrin ABC transporter, substrate-binding protein
Family
B
IPR006059
Bacterial-type extracellular solute-binding protein
Family
B
IPR038485
Protein Z, RING-type zinc finger superfamily
Homologous Superfamily
B
IPR024183
RING finger protein Z, arenaviridae
Family
B
IPR003224
RING finger protein Z, zinc finger
Domain
A
IPR007099
RNA-directed RNA polymerase, negative-strand RNA virus
Domain
A
IPR010453
RNA polymerase, arenaviral
Family
A
IPR026382
RNA endonuclease, cap-snatching, arenaviral
Domain
A
IPR048006
RNA endonuclease, cap-snatching, bunyaviral
Domain
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