7VFH

Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03340	e7vfhA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
A	PF03340	e7vfhA3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
B	PF03340	e7vfhB3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
B	PF03340	e7vfhB1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
C	PF03340	e7vfhC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
C	PF03340	e7vfhC2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
D	PF03340	e7vfhD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
D	PF03340	e7vfhD1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
E	PF03340	e7vfhE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
E	PF03340	e7vfhE3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
F	PF03340	e7vfhF3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
F	PF03340	e7vfhF1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
G	PF03340	e7vfhG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
G	PF03340	e7vfhG2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
H	PF03340	e7vfhH3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
H	PF03340	e7vfhH1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
J [auth L]	PF03340	e7vfhL2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
J [auth L]	PF03340	e7vfhL1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
M [auth N]	PF03340	e7vfhN2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
M [auth N]	PF03340	e7vfhN3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
O [auth M]	PF03340	e7vfhM3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
O [auth M]	PF03340	e7vfhM2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
P [auth Q]	PF03340	e7vfhQ3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
P [auth Q]	PF03340	e7vfhQ2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
Q [auth R]	PF03340	e7vfhR1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
Q [auth R]	PF03340	e7vfhR2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
R [auth P]	PF03340	e7vfhP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
R [auth P]	PF03340	e7vfhP3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
I	PF03340	e7vfhI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
I	PF03340	e7vfhI3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
K [auth J]	PF03340	e7vfhJ2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
K [auth J]	PF03340	e7vfhJ1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
L [auth K]	PF03340	e7vfhK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
L [auth K]	PF03340	e7vfhK3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)
N [auth O]	PF03340	e7vfhO2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03340	ECOD (1.6)
N [auth O]	PF03340	e7vfhO1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: PF03340	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	PF03340	Poxvirus rifampicin resistance protein (Pox_Rif)	Poxvirus rifampicin resistance protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	Scaffold protein D13	identical protein binding protein binding binding	response to stimulus response to chemical response to antibiotic	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	IPR005008	Poxvirus rifampicin-resistance	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7VFH

Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage