Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
O [auth T]SCOP2B SuperfamilyBromodomain8084283 3001843 SCOP2B (2022-06-29)
Q [auth V]SCOP2B SuperfamilyPFU(mutate) domain-like8055786 3002311 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]Histone_1e7vdvB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
E [auth F]Histone_1e7vdvF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
B [auth C]Histone_1e7vdvC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
F [auth G]Histone_1e7vdvG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
C [auth D]Histonee7vdvD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
G [auth H]Histonee7vdvH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
D [auth E]Histonee7vdvE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
W [auth K]Histonee7vdvK1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
K [auth N]Actin_1ste7vdvN1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
K [auth N]Actin_2nde7vdvN2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
L [auth P]Actin_1ste7vdvP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
L [auth P]Actin_2nde7vdvP2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
E [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
M [auth Q]PF01388ARID/BRIGHT DNA binding domain (ARID)ARID/BRIGHT DNA binding domainThis domain is know as ARID for AT-Rich Interaction Domain [1], and also known as the BRIGHT domain [3].Domain
M [auth Q]PF02257RFX DNA-binding domain (RFX_DNA_binding)RFX DNA-binding domainRFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-b ...RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Domain
O [auth T]PF00439Bromodomain (Bromodomain)BromodomainBromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3].Domain
Q [auth V]PF04855SNF5 / SMARCB1 / INI1 (SNF5)SNF5 / SMARCB1 / INI1- Family
R [auth W],
S [auth X]
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
R [auth W],
S [auth X]
PF16495SWIRM-associated region 1 (SWIRM-assoc_1)SWIRM-associated region 1- Family
R [auth W],
S [auth X]
PF04433SWIRM domain (SWIRM)SWIRM domainThis SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1].Domain
T [auth Y]PF02201SWIB/MDM2 domain (SWIB)SWIB/MDM2 domainThis family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. Thi ...This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2 [2].
Domain
B [auth C],
F [auth G]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B [auth C],
F [auth G]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
C [auth D],
G [auth H]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D [auth E],
W [auth K]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
J [auth A]PF14619Snf2-ATP coupling, chromatin remodelling complex (SnAC)Snf2-ATP coupling, chromatin remodelling complexThis domain appears to play a crucial role in chromatin remodelling for yeast SWI/SNF. It binds histones. It is required for mobilising nucleosomes and lies within the catalytic subunit of the yeast SWI/SNF. It is found to be universally conserved [1 ...This domain appears to play a crucial role in chromatin remodelling for yeast SWI/SNF. It binds histones. It is required for mobilising nucleosomes and lies within the catalytic subunit of the yeast SWI/SNF. It is found to be universally conserved [1].
Domain
J [auth A]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
J [auth A]PF00176SNF2-related domain (SNF2-rel_dom)SNF2-related domainThis domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.
Domain
K [auth N]PF00022Actin (Actin)Actin- Family
L [auth P]PF00022Actin (Actin)Actin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
E [auth F]
Histone H4 -
M [auth Q]AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2
N [auth R]PHD finger protein 10
O [auth T]Isoform 2 of Bromodomain-containing protein 7
P [auth U]unknown---
Q [auth V]SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
R [auth W],
S [auth X]
SWI/SNF complex subunit SMARCC2
T [auth Y]SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
U [auth Z]SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
V [auth a]Protein polybromo-1
X [auth M]unknown---
B [auth C],
F [auth G]
Histone H2A -
C [auth D],
G [auth H]
Histone H2B 1.1 -
D [auth E],
W [auth K]
Histone H3 -
H [auth I]DNA (207-MER)---
I [auth J]DNA (207-MER)---
J [auth A]Isoform 2 of Transcription activator BRG1
K [auth N]Actin-like protein 6A
L [auth P]Actin, cytoplasmic 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
E [auth F]
IPR009072Histone-foldHomologous Superfamily
A [auth B],
E [auth F]
IPR001951Histone H4Family
A [auth B],
E [auth F]
IPR035425CENP-T/Histone H4, histone foldDomain
A [auth B],
E [auth F]
IPR019809Histone H4, conserved siteConserved Site
A [auth B],
E [auth F]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
M [auth Q]IPR016024Armadillo-type foldHomologous Superfamily
M [auth Q]IPR013087Zinc finger C2H2-typeDomain
M [auth Q]IPR001606ARID DNA-binding domainDomain
M [auth Q]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
M [auth Q]IPR003150DNA-binding RFX-type winged-helix domainDomain
M [auth Q]IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
N [auth R]IPR001965Zinc finger, PHD-typeDomain
N [auth R]IPR019787Zinc finger, PHD-fingerDomain
N [auth R]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
N [auth R]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
N [auth R]IPR038045PHD finger protein 10, PHD finger 1Domain
O [auth T]IPR021900Protein of unknown function DUF3512Family
O [auth T]IPR001487BromodomainDomain
O [auth T]IPR036427Bromodomain-like superfamilyHomologous Superfamily
Q [auth V]IPR048664SWI/SNF Subunit INI1, DNA binding domainDomain
Q [auth V]IPR017393Chromatin-remodeling complex component Sfh1/SNF5Family
Q [auth V]IPR006939SNF5/SMARCB1/INI1Family
R [auth W],
S [auth X]
IPR009057Homeobox-like domain superfamilyHomologous Superfamily
R [auth W],
S [auth X]
IPR032451SMARCC, C-terminalDomain
R [auth W],
S [auth X]
IPR036420BRCT domain superfamilyHomologous Superfamily
R [auth W],
S [auth X]
IPR000953Chromo/chromo shadow domainDomain
R [auth W],
S [auth X]
IPR032450SMARCC, N-terminalDomain
R [auth W],
S [auth X]
IPR032448SMARCC, SWIRM-associated domainDomain
R [auth W],
S [auth X]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
R [auth W],
S [auth X]
IPR017884SANT domainDomain
R [auth W],
S [auth X]
IPR001005SANT/Myb domainDomain
R [auth W],
S [auth X]
IPR007526SWIRM domainDomain
T [auth Y]IPR003121SWIB/MDM2 domainDomain
T [auth Y]IPR038041SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domainDomain
T [auth Y]IPR036885SWIB/MDM2 domain superfamilyHomologous Superfamily
T [auth Y]IPR019835SWIB domainDomain
U [auth Z]IPR009071High mobility group box domainDomain
U [auth Z]IPR036910High mobility group box domain superfamilyHomologous Superfamily
V [auth a]IPR037968Protein polybromo-1, Bromodomain 5Domain
V [auth a]IPR018359Bromodomain, conserved siteConserved Site
V [auth a]IPR001487BromodomainDomain
V [auth a]IPR001025Bromo adjacent homology (BAH) domainDomain
V [auth a]IPR043151Bromo adjacent homology (BAH) domain superfamilyHomologous Superfamily
V [auth a]IPR036427Bromodomain-like superfamilyHomologous Superfamily
V [auth a]IPR037382Remodelling complex subunit Rsc/polybromoFamily
V [auth a]IPR009071High mobility group box domainDomain
V [auth a]IPR036910High mobility group box domain superfamilyHomologous Superfamily
B [auth C],
F [auth G]
IPR009072Histone-foldHomologous Superfamily
B [auth C],
F [auth G]
IPR007125Histone H2A/H2B/H3Domain
B [auth C],
F [auth G]
IPR002119Histone H2AFamily
B [auth C],
F [auth G]
IPR032454Histone H2A, C-terminal domainDomain
B [auth C],
F [auth G]
IPR032458Histone H2A conserved siteConserved Site
C [auth D],
G [auth H]
IPR009072Histone-foldHomologous Superfamily
C [auth D],
G [auth H]
IPR007125Histone H2A/H2B/H3Domain
C [auth D],
G [auth H]
IPR000558Histone H2BFamily
D [auth E],
W [auth K]
IPR009072Histone-foldHomologous Superfamily
D [auth E],
W [auth K]
IPR007125Histone H2A/H2B/H3Domain
D [auth E],
W [auth K]
IPR000164Histone H3/CENP-AFamily
J [auth A]IPR030100SWI/SNF complex subunit BRG1, ATP-bindingDomain
J [auth A]IPR018359Bromodomain, conserved siteConserved Site
J [auth A]IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
J [auth A]IPR014978Glutamine-Leucine-Glutamine, QLQDomain
J [auth A]IPR006576BRK domainDomain
J [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
J [auth A]IPR037259BRK domain superfamilyHomologous Superfamily
J [auth A]IPR001650Helicase, C-terminal domain-likeDomain
J [auth A]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
J [auth A]IPR036427Bromodomain-like superfamilyHomologous Superfamily
J [auth A]IPR029295Snf2, ATP coupling domainDomain
J [auth A]IPR000330SNF2, N-terminalDomain
J [auth A]IPR001487BromodomainDomain
J [auth A]IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
J [auth A]IPR014012Helicase/SANT-associated domainDomain
K [auth N]IPR004001Actin, conserved siteConserved Site
K [auth N]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
K [auth N]IPR004000Actin familyFamily
L [auth P]IPR020902Actin/actin-like conserved siteConserved Site
L [auth P]IPR004001Actin, conserved siteConserved Site
L [auth P]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
L [auth P]IPR004000Actin familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
M [auth Q]PharosQ68CP9
N [auth R]PharosQ8WUB8
O [auth T]PharosQ9NPI1
Q [auth V]PharosQ12824
R [auth W],
S [auth X]
PharosQ8TAQ2
T [auth Y]PharosQ96GM5
U [auth Z]PharosQ969G3
V [auth a]PharosQ86U86
J [auth A]PharosP51532
K [auth N]PharosO96019
L [auth P]PharosP60709