7VCI | pdb_00007vci

Structure of Xenopus laevis NPC nuclear ring asymmetric unit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCoat and nuclear envelope proteins 8105019 3002276 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyCoat and nuclear envelope proteins 8105019 3002276 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CANAPC4_WD40_6e7vciC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
LANAPC4_WD40_6e7vciL1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
FNup96e7vciF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
ONup96e7vciO1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
PANAPC4_WD40_4e7vciP1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
GANAPC4_WD40_4e7vciG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
INucleoporin_Ne7vciI2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
INucleoporin_C_Ce7vciI1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
RNucleoporin_Ne7vciR2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
RNucleoporin_C_Ce7vciR1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
EANAPC4_WD40_10e7vciE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
NANAPC4_WD40_10e7vciN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
ANucleopor_Nup85e7vciA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
JNucleopor_Nup85e7vciJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, L
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
G, P
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I, R
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat
I, R
PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
H, Q
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
E, N
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
B, K
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat
PF13934Nuclear pore complex assembly (ELYS)Nuclear pore complex assembly- Repeat
PF16687beta-propeller of ELYS nucleoporin (ELYS-bb)beta-propeller of ELYS nucleoporin- Repeat
PF11894Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)Nuclear pore complex scaffold, nucleoporins 186/192/205- Repeat
A, J
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, L
Nucleoporin SEH1-A
F, O
Nuclear pore complex protein Nup96
G, P
GATOR complex protein SEC13
I, R
outer Nup133
H, Q
Nuclear pore complex protein
E, N
MGC83926 protein-
D, M
Nup160---
B, K
MGC154553 protein- -
Nuclear pore complex protein Nup93
Protein ELYS
MGC83295 protein
A, J
Nuclear pore complex protein Nup85

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, L
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C, L
IPR037363Sec13/Seh1 familyFamily
C, L
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C, L
IPR001680WD40 repeatRepeat
C, L
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F, O
IPR025574Nucleoporin FG repeatRepeat
F, O
IPR037665Nucleoporin peptidase S59-likeFamily
F, O
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
F, O
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
F, O
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
G, P
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G, P
IPR037363Sec13/Seh1 familyFamily
G, P
IPR001680WD40 repeatRepeat
G, P
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I, R
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
I, R
IPR037624Nuclear pore complex protein Nup133-likeFamily
I, R
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H, Q
IPR007252Nuclear pore protein 84/107Family
E, N
IPR037626Nucleoporin Nup37Family
E, N
IPR001680WD40 repeatRepeat
E, N
IPR019775WD40 repeat, conserved siteConserved Site
E, N
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E, N
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B, K
IPR001680WD40 repeatRepeat
B, K
IPR019775WD40 repeat, conserved siteConserved Site
B, K
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B, K
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR007231Nucleoporin interacting component Nup93/Nic96Family
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR032040ELYS, beta-propeller domainDomain
IPR052620ELYS/MEL-28 Nuclear Assembly FactorFamily
IPR025151ELYS-like domainDomain
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
A, J
IPR011502Nucleoporin Nup85-likeFamily