7V5Y
Crystal structure of hexameric complex of Sa2YoeB-Sa2YefM toxin-antitoxin from Staphylococcus aureus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PhdYeFM_antitox | e7v5yB1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
B [auth D] | PhdYeFM_antitox | e7v5yD1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
C [auth A] | PhdYeFM_antitox | e7v5yA1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
D [auth C] | PhdYeFM_antitox | e7v5yC1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
E | ParE_toxin_1 | e7v5yE1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: ParE_toxin_1 | ECOD (1.6) |
F | ParE_toxin_1 | e7v5yF1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: ParE_toxin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth D], C [auth A], D [auth C] | PF02604 | Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox) | Antitoxin Phd_YefM, type II toxin-antitoxin system | Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ... | Domain |
PF06769 | YoeB-like toxin of bacterial type II toxin-antitoxin system (YoeB_toxin) | YoeB-like toxin of bacterial type II toxin-antitoxin system | YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth D], C [auth A], D [auth C] | IPR006442 | Type II toxin-antitoxin system, antitoxin Phd/YefM | Family |
A [auth B], B [auth D], C [auth A], D [auth C] | IPR051405 | phD/YefM antitoxin | Family |
A [auth B], B [auth D], C [auth A], D [auth C] | IPR036165 | YefM-like superfamily | Homologous Superfamily |
IPR009614 | Toxin YoeB | Family | |
IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily |