7V3V | pdb_00007v3v

Cryo-EM structure of MCM double hexamer bound with DDK in State I


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth H]e7v3vH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: AAAF:ECOD (20:10:01)
F [auth 7]e7v3v71 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
L [auth G]e7v3vG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
K [auth F]e7v3vF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
E [auth 6]e7v3v61 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
J [auth E]e7v3vE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
D [auth 5]e7v3v51 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
I [auth D]e7v3vD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
C [auth 4]e7v3v41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
H [auth C]e7v3vC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
B [auth 3]e7v3v31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
A [auth 2]e7v3v21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
G [auth B]e7v3vB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth I]PF08630Dfp1/Him1, central region (Dfp1_Him1_M)Dfp1/Him1, central region- Family
N [auth I]PF22437BRCT domain (DBF4_BRCT)BRCT domainThis entry represents the BRCT domain found in Dbf4 protein. Dbf4 is a conserved eukaryotic protein that functions as the regulatory subunit of the Dbf4-dependent kinase (DDK) complex. DDK plays essential roles in DNA replication initiation and check ...This entry represents the BRCT domain found in Dbf4 protein. Dbf4 is a conserved eukaryotic protein that functions as the regulatory subunit of the Dbf4-dependent kinase (DDK) complex. DDK plays essential roles in DNA replication initiation and checkpoint activation. During the replication checkpoint, Saccharomyces cerevisiae Dbf4 is phosphorylated in a Rad53-dependent manner, and this, in turn, inhibits initiation of replication at late origins [1]. This entry represents the minimal region of Dbf4 required for the interaction with the checkpoint kinase Rad53 [1].
Domain
M [auth H]PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
F [auth 7],
L [auth G]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
F [auth 7],
L [auth G]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
F [auth 7],
L [auth G]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
F [auth 7],
L [auth G]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
E [auth 6],
K [auth F]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
E [auth 6],
K [auth F]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
E [auth 6],
K [auth F]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
E [auth 6],
K [auth F]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
D [auth 5],
J [auth E]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
D [auth 5],
J [auth E]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
D [auth 5],
J [auth E]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
D [auth 5],
J [auth E]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
C [auth 4],
I [auth D]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
C [auth 4],
I [auth D]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
C [auth 4],
I [auth D]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
C [auth 4],
I [auth D]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
B [auth 3],
H [auth C]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
B [auth 3],
H [auth C]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
B [auth 3],
H [auth C]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
B [auth 3],
H [auth C]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
A [auth 2],
G [auth B]
PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
A [auth 2],
G [auth B]
PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
A [auth 2],
G [auth B]
PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
A [auth 2],
G [auth B]
PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N [auth I]DDK kinase regulatory subunit DBF4
M [auth H]Cell division control protein 7
F [auth 7],
L [auth G]
DNA replication licensing factor MCM7
E [auth 6],
K [auth F]
DNA replication licensing factor MCM6
D [auth 5],
J [auth E]
Minichromosome maintenance protein 5
C [auth 4],
I [auth D]
DNA replication licensing factor MCM4
B [auth 3],
H [auth C]
DNA replication licensing factor MCM3
A [auth 2],
G [auth B]
DNA replication licensing factor MCM2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth I]IPR013939Regulatory subunit Dfp1/Him1, central regionDomain
N [auth I]IPR051590DNA Replication Regulatory Kinase SubunitFamily
N [auth I]IPR006572Zinc finger, DBF-typeDomain
N [auth I]IPR038545DBF-type zinc finger superfamilyHomologous Superfamily
N [auth I]IPR036420BRCT domain superfamilyHomologous Superfamily
N [auth I]IPR055116DBF4, BRCT domainDomain
M [auth H]IPR000719Protein kinase domainDomain
M [auth H]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
M [auth H]IPR008271Serine/threonine-protein kinase, active siteActive Site
F [auth 7],
L [auth G]
IPR031327Mini-chromosome maintenance proteinFamily
F [auth 7],
L [auth G]
IPR008050DNA replication licensing factor Mcm7Family
F [auth 7],
L [auth G]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 7],
L [auth G]
IPR003593AAA+ ATPase domainDomain
F [auth 7],
L [auth G]
IPR001208MCM domainDomain
F [auth 7],
L [auth G]
IPR041562MCM, AAA-lid domainDomain
F [auth 7],
L [auth G]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 7],
L [auth G]
IPR027925MCM, N-terminal domainDomain
F [auth 7],
L [auth G]
IPR033762MCM OB domainDomain
F [auth 7],
L [auth G]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth 6],
K [auth F]
IPR008049DNA replication licensing factor Mcm6Family
E [auth 6],
K [auth F]
IPR041024Mcm6, C-terminal winged-helix domainDomain
E [auth 6],
K [auth F]
IPR031327Mini-chromosome maintenance proteinFamily
E [auth 6],
K [auth F]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 6],
K [auth F]
IPR001208MCM domainDomain
E [auth 6],
K [auth F]
IPR041562MCM, AAA-lid domainDomain
E [auth 6],
K [auth F]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 6],
K [auth F]
IPR027925MCM, N-terminal domainDomain
E [auth 6],
K [auth F]
IPR033762MCM OB domainDomain
E [auth 6],
K [auth F]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 5],
J [auth E]
IPR031327Mini-chromosome maintenance proteinFamily
D [auth 5],
J [auth E]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
D [auth 5],
J [auth E]
IPR001208MCM domainDomain
D [auth 5],
J [auth E]
IPR041562MCM, AAA-lid domainDomain
D [auth 5],
J [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 5],
J [auth E]
IPR054125MCM5, C-terminal domainDomain
D [auth 5],
J [auth E]
IPR027925MCM, N-terminal domainDomain
D [auth 5],
J [auth E]
IPR033762MCM OB domainDomain
D [auth 5],
J [auth E]
IPR008048DNA replication licensing factor Mcm5Family
D [auth 5],
J [auth E]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth 4],
I [auth D]
IPR031327Mini-chromosome maintenance proteinFamily
C [auth 4],
I [auth D]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 4],
I [auth D]
IPR001208MCM domainDomain
C [auth 4],
I [auth D]
IPR041562MCM, AAA-lid domainDomain
C [auth 4],
I [auth D]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 4],
I [auth D]
IPR027925MCM, N-terminal domainDomain
C [auth 4],
I [auth D]
IPR008047DNA replication licensing factor MCM4Family
C [auth 4],
I [auth D]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
C [auth 4],
I [auth D]
IPR033762MCM OB domainDomain
C [auth 4],
I [auth D]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth 3],
H [auth C]
IPR031327Mini-chromosome maintenance proteinFamily
B [auth 3],
H [auth C]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
B [auth 3],
H [auth C]
IPR003593AAA+ ATPase domainDomain
B [auth 3],
H [auth C]
IPR001208MCM domainDomain
B [auth 3],
H [auth C]
IPR041562MCM, AAA-lid domainDomain
B [auth 3],
H [auth C]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 3],
H [auth C]
IPR054007MCM3 winged helix domainDomain
B [auth 3],
H [auth C]
IPR027925MCM, N-terminal domainDomain
B [auth 3],
H [auth C]
IPR056575MCM3-like, winged helix domainDomain
B [auth 3],
H [auth C]
IPR008046DNA replication licensing factor Mcm3Family
B [auth 3],
H [auth C]
IPR033762MCM OB domainDomain
B [auth 3],
H [auth C]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth 2],
G [auth B]
IPR031327Mini-chromosome maintenance proteinFamily
A [auth 2],
G [auth B]
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
A [auth 2],
G [auth B]
IPR001208MCM domainDomain
A [auth 2],
G [auth B]
IPR041562MCM, AAA-lid domainDomain
A [auth 2],
G [auth B]
IPR008045DNA replication licensing factor Mcm2Family
A [auth 2],
G [auth B]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 2],
G [auth B]
IPR027925MCM, N-terminal domainDomain
A [auth 2],
G [auth B]
IPR033762MCM OB domainDomain
A [auth 2],
G [auth B]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily