7V1N | pdb_00007v1n

Structure of the Clade 2 C. difficile TcdB in complex with its receptor TFPI


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth K]SCOP2B SuperfamilyBPTI-like 8070115 3000628 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNucleotide-diphospho-sugar transferases 8103504 3000077 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth K]Kunitz_BPTIe7v1nK1 A: few secondary structure elementsX: BPTI-like (From Topology)H: BPTI-like (From Topology)T: BPTI-likeF: Kunitz_BPTIECOD (1.6)
ACW_binding_1e7v1nA5 A: beta duplicates or obligate multimersX: beta-hairpin stack (From Topology)H: beta-hairpin stack (From Topology)T: beta-hairpin stackF: CW_binding_1ECOD (1.6)
ATcdA_TcdB_pore_2nde7v1nA1 A: beta duplicates or obligate multimersX: Toxin A (TcdA) delivery domain (From Topology)H: Toxin A (TcdA) delivery domain (From Topology)T: Toxin A (TcdA) delivery domainF: TcdA_TcdB_pore_2ndECOD (1.6)
ATcdA_TcdB_pore_1ste7v1nA4 A: alpha arraysX: Toxin A (TcdA) helical domain (From Topology)H: Toxin A (TcdA) helical domain (From Topology)T: Toxin A (TcdA) helical domainF: TcdA_TcdB_pore_1stECOD (1.6)
AMLDe7v1nA8 A: alpha bundlesX: Bromodomain-likeH: PMT helical bundle domain-likeT: PMT helical bundle domain-likeF: MLDECOD (1.6)
ATcdA_TcdBe7v1nA2 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: TcdA_TcdBECOD (1.6)
APeptidase_C80e7v1nA3 A: a/b three-layered sandwichesX: Caspase-like (From Topology)H: Caspase-like (From Topology)T: Caspase-likeF: Peptidase_C80ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.11050 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold MARTX cysteine protease (CPD) domainCATH (utative)
A2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin BindingCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth K]PF00014Kunitz/Bovine pancreatic trypsin inhibitor domain (Kunitz_BPTI)Kunitz/Bovine pancreatic trypsin inhibitor domainIndicative of a protease inhibitor, usually a serine protease inhibitor. Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure. Certain family members are similar to the ...Indicative of a protease inhibitor, usually a serine protease inhibitor. Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure. Certain family members are similar to the tick anticoagulant peptide (TAP, Swiss:P17726). This is a highly selective inhibitor of factor Xa in the blood coagulation pathways [1]. TAP molecules are highly dipolar [2], and are arranged to form a twisted two- stranded antiparallel beta-sheet followed by an alpha helix [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth K]Isoform Beta of Tissue factor pathway inhibitor
Toxin B

Pharos: Disease Associations Pharos Homepage Annotation