cryo-EM structure of the Raptor-TFEB-Rag-Ragulator complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093374 | 3001810 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093372 | 3002022 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093372 | 3002022 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093374 | 3001810 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093371 | 3002022 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093371 | 3002022 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8088845 | 3001810 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8088845 | 3001810 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8040242 | 3001810 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8040242 | 3001810 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8092495 | 3001810 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8092495 | 3001810 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e7ux2A1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| B | e7ux2B1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| I | e7ux2I1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| C | e7ux2C1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| J | e7ux2J1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| E | e7ux2E1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| L | e7ux2L1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| F | e7ux2F1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| M | e7ux2M1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| G | e7ux2G1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| N | e7ux2N1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| H | e7ux2H1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) | |
| O | e7ux2O1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PH | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
| B | 3.30.450.190 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (utative) | |
| I | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
| I | 3.30.450.190 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF14538 | Raptor N-terminal CASPase like domain (Raptor_N) | Raptor N-terminal CASPase like domain | This domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. | Domain | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| PF02985 | HEAT repeat (HEAT) | HEAT repeat | - | Repeat | |
| PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ... | Domain | |
| PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ... | Domain | |
| PF03259 | Roadblock/LC7 domain (Robl_LC7) | Roadblock/LC7 domain | This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ... | Domain | |
| PF08923 | Mitogen-activated protein kinase kinase 1 interacting (MAPKK1_Int) | Mitogen-activated protein kinase kinase 1 interacting | Mitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a tw ... | Domain | |
| PF16672 | Ragulator complex protein LAMTOR5 (LAMTOR5) | Ragulator complex protein LAMTOR5 | Domain | ||
| PF15951 | MITF/TFEB/TFEC/TFE3 N-terminus (MITF_TFEB_C_3_N) | MITF/TFEB/TFEC/TFE3 N-terminus | - | Family |














