Citrus V-ATPase State 1, H in contact with subunits AB
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N [auth i] | ATP-synt_C | e7uwai2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| Q [auth l] | ATP-synt_C | e7uwal1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| R [auth m] | ATP-synt_C | e7uwam2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| S [auth n] | ATP-synt_C | e7uwan2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| T [auth o] | ATP-synt_C | e7uwao2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| P [auth k] | ATP-synt_C | e7uwak1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| O [auth j] | ATP-synt_C | e7uwaj1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| M [auth h] | ATP-synt_C | e7uwah2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| L [auth g] | ATP-synt_C | e7uwag2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| K [auth d] | vATP-synt_AC39_3rd | e7uwad2 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_3rd | ECOD (1.6) |
| K [auth d] | vATP-synt_AC39_1st | e7uwad1 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_1st | ECOD (1.6) |
| J [auth c] | ATP-synt_C | e7uwac1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
| H [auth N] | ATP-synt_F | e7uwaN1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: AtpF-like (From Topology) | T: AtpF-like | F: ATP-synt_F | ECOD (1.6) |
| G [auth M] | ATP-synt_D | e7uwaM1 | A: alpha bundles | X: V-type proton ATPase subunit D (From Topology) | H: V-type proton ATPase subunit D (From Topology) | T: V-type proton ATPase subunit D | F: ATP-synt_D | ECOD (1.6) |
| B [auth F] | ATP-synt_ab_N | e7uwaF2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| B [auth F] | ATP-synt_ab_C | e7uwaF3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| B [auth F] | ATP-synt_ab | e7uwaF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| F [auth D] | ATP-synt_ab_N | e7uwaD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| F [auth D] | ATP-synt_ab_C | e7uwaD2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| F [auth D] | ATP-synt_ab | e7uwaD3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| D [auth B] | ATP-synt_ab_N | e7uwaB3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| D [auth B] | ATP-synt_ab_C | e7uwaB2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| D [auth B] | ATP-synt_ab | e7uwaB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| EA [auth P] | V-ATPase_H_C | e7uwaP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: V-ATPase_H_C | ECOD (1.6) |
| BA [auth O] | V-ATPase_C_1st | e7uwaO1 | A: alpha bundles | X: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | T: helical bundle domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_1st | ECOD (1.6) |
| BA [auth O] | V-ATPase_C_2nd | e7uwaO2 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_2nd | ECOD (1.6) |
| Y [auth J] | V-ATPase_G | e7uwaJ1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
| W [auth H] | V-ATPase_G | e7uwaH1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
| V [auth G] | vATP-synt_E_C | e7uwaG1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
| V [auth G] | vATP-synt_E_N | e7uwaG2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
| Z [auth K] | vATP-synt_E_C | e7uwaK2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
| Z [auth K] | vATP-synt_E_N | e7uwaK1 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
| X [auth I] | vATP-synt_E_C | e7uwaI1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
| X [auth I] | vATP-synt_E_N | e7uwaI2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
| E [auth C] | ATP-synt_ab_N | e7uwaC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| E [auth C] | ATP-synt_ab_C | e7uwaC2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| E [auth C] | ATP-synt_ab_Xtn | e7uwaC3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| E [auth C] | ATP-synt_ab | e7uwaC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| C [auth A] | ATP-synt_ab_N | e7uwaA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| C [auth A] | ATP-synt_ab_C | e7uwaA3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| C [auth A] | ATP-synt_ab_Xtn | e7uwaA1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| C [auth A] | ATP-synt_ab | e7uwaA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| A [auth E] | ATP-synt_ab_N | e7uwaE2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| A [auth E] | ATP-synt_ab_C | e7uwaE4 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| A [auth E] | ATP-synt_ab_Xtn | e7uwaE3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| A [auth E] | ATP-synt_ab | e7uwaE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
| H [auth N] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| G [auth M] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
| G [auth M] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| B [auth F], D [auth B], F [auth D] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| B [auth F], D [auth B], F [auth D] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| B [auth F], D [auth B], F [auth D] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| BA [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
| BA [auth O] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| AA [auth L], W [auth H], Y [auth J] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| V [auth G], X [auth I], Z [auth K] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
| V [auth G], X [auth I], Z [auth K] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| A [auth E], C [auth A], E [auth C] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| A [auth E], C [auth A], E [auth C] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| A [auth E], C [auth A], E [auth C] | PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain |
| A [auth E], C [auth A], E [auth C] | PF01496 | V-type ATPase 116kDa subunit family (V_ATPase_I) | V-type ATPase 116kDa subunit family | - | Family |
| A [auth E], C [auth A], E [auth C] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| A [auth E], C [auth A], E [auth C] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |














