7UML | pdb_00007uml

Structure of vesicular stomatitis virus (local reconstruction, 3.5 A resolution)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	VSV matrix protein	8107266	3001449	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	VSV matrix protein	8107266	3001449	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Vesiculo_matrix	e7umlC1	A: a+b complex topology	X: VSV matrix protein (From Topology)	H: VSV matrix protein (From Topology)	T: VSV matrix protein	F: Vesiculo_matrix	ECOD (1.6)
B	Vesiculo_matrix	e7umlB1	A: a+b complex topology	X: VSV matrix protein (From Topology)	H: VSV matrix protein (From Topology)	T: VSV matrix protein	F: Vesiculo_matrix	ECOD (1.6)
A	Rhabdo_ncap	e7umlA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
A	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, E	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth R]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-
B, C, F	Matrix protein	structural constituent of virion structural molecule activity	phosphorylation phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host microtubule cytoskeleton symbiont-mediated perturbation of host cytoskeleton disruption of anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical structure virion assembly viral process viral budding phosphorylation phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host microtubule cytoskeleton symbiont-mediated perturbation of host cytoskeleton disruption of anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical structure virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism symbiont-mediated suppression of host transcription initiation from RNA polymerase II promoter biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host intracellular transport symbiont-mediated suppression of host mRNA export from nucleus symbiont-mediated suppression of host gene expression	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host cell endomembrane system host intracellular region host cell nuclear envelope host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host cell endomembrane system host intracellular region host cell nuclear envelope virion component viral membrane viral envelope membrane host cell cytoplasm
A, D, E	Nucleoprotein	RNA binding binding nucleic acid binding	viral gene expression viral process viral transcription nucleobase-containing compound metabolic process RNA replication RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, F	IPR009397	Vesiculovirus matrix	Family
B, C, F	IPR036711	VSV matrix superfamily	Homologous Superfamily
A, D, E	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, D, E	IPR000448	Rhabdovirus nucleocapsid	Domain
A, D, E	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, D, E	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.