7UIG

Mediator-PIC Early (Mediator A)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth q]SCOP2B SuperfamilyMediator of RNA polymerase II transcription subunit 178091516 3002517 SCOP2B (2022-06-29)
K [auth r]SCOP2B SuperfamilyCYTH-like phosphatases8090011 3001426 SCOP2B (2022-06-29)
M [auth t]SCOP2B SuperfamilyCYTH-like phosphatases8091513 3001426 SCOP2B (2022-06-29)
O [auth v]SCOP2B SuperfamilyMediator subcomplex-like8051778 3001613 SCOP2B (2022-06-29)
P [auth w]SCOP2B SuperfamilyMediator of RNA polymerase II transcription subunit 318105980 3002846 SCOP2B (2022-06-29)
C [auth f]SCOP2B SuperfamilyMediator of RNA polymerase II transcription subunit 68091511 3002516 SCOP2B (2022-06-29)
D [auth g]SCOP2B SuperfamilyMediator subcomplex-like8034652 3001613 SCOP2B (2022-06-29)
H [auth k]SCOP2B SuperfamilyMediator subcomplex-like8051777 3001613 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth r]PF09637e7uigr1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: PF09637ECOD (1.6)
M [auth t]PF08612e7uigt1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: PF08612ECOD (1.6)
N [auth u]PF11221e7uigu1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: RNA polymerase II holoenzyme component SRB7 (MED21)F: PF11221ECOD (1.6)
O [auth v]PF06179e7uigv1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 22 (From Topology)H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)T: Mediator of RNA polymerase II transcription subunit 22F: PF06179ECOD (1.6)
P [auth w]PF05669e7uigw1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: PF05669ECOD (1.6)
C [auth f]PF04934e7uigf1 A: extended segmentsX: Mediator of RNA polymerase II transcription subunit 6 (From Topology)H: Mediator of RNA polymerase II transcription subunit 6 (From Topology)T: Mediator of RNA polymerase II transcription subunit 6F: PF04934ECOD (1.6)
D [auth g]PF05983e7uigg1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: MED7 hinge regionF: PF05983ECOD (1.6)
D [auth g]PF05983e7uigg2 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: PF05983ECOD (1.6)
E [auth h]PF10232e7uigh1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 8 (From Topology)H: Mediator of RNA polymerase II transcription subunit 8 (From Topology)T: Mediator of RNA polymerase II transcription subunit 8F: PF10232ECOD (1.6)
H [auth k]PF10280e7uigk1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 11 (From Topology)H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)T: Mediator of RNA polymerase II transcription subunit 11F: PF10280ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth a]PF10744Mediator of RNA polymerase II transcription subunit 1 (Med1)Mediator of RNA polymerase II transcription subunit 1Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subu ...Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subunits essential for viability of the whole organism via its role in environmentally-directed cell-fate decisions [1]. Med1 is part of the tail region of the Mediator complex [2].
Domain
J [auth q]PF10156Subunit 17 of Mediator complex (Med17)Subunit 17 of Mediator complex- Family
K [auth r]PF09637Med18 protein (Med18)Med18 proteinMed18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ...Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators [1].
Domain
L [auth s]PF08633Rox3 mediator complex subunit (Rox3)Rox3 mediator complex subunit- Family
M [auth t]PF08612TATA-binding related factor (TRF) of subunit 20 of Mediator complex (Med20)TATA-binding related factor (TRF) of subunit 20 of Mediator complex- Family
N [auth u]PF11221Subunit 21 of Mediator complex (Med21)Subunit 21 of Mediator complex- Family
O [auth v]PF06179Surfeit locus protein 5 subunit 22 of Mediator complex (Med22)Surfeit locus protein 5 subunit 22 of Mediator complex- Family
P [auth w]PF05669SOH1 (Med31)SOH1- Family
Q [auth z]PF05001RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R)RNA polymerase Rpb1 C-terminal repeat- Repeat
B [auth d]PF10018Vitamin-D-receptor interacting Mediator subunit 4 (Med4)Vitamin-D-receptor interacting Mediator subunit 4- Family
C [auth f]PF04934MED6 mediator sub complex component (Med6)MED6 mediator sub complex component- Family
D [auth g]PF05983MED7 protein (Med7)MED7 protein- Family
E [auth h]PF10232Mediator of RNA polymerase II transcription complex subunit 8 (Med8)Mediator of RNA polymerase II transcription complex subunit 8- Family
F [auth i]PF07544RNA polymerase II transcription mediator complex subunit 9 (Med9)RNA polymerase II transcription mediator complex subunit 9- Family
G [auth j]PF09748Transcription factor subunit Med10 of Mediator complex (Med10)Transcription factor subunit Med10 of Mediator complex- Family
H [auth k]PF10280Mediator complex protein (Med11)Mediator complex protein- Family
I [auth n]PF08638Mediator complex subunit MED14 (Med14)Mediator complex subunit MED14- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]Mediator of RNA polymerase II transcription subunit 1
J [auth q]Mediator of RNA polymerase II transcription subunit 17
K [auth r]Mediator of RNA polymerase II transcription subunit 18
L [auth s]Mediator of RNA polymerase II transcription subunit 19
M [auth t]Mediator of RNA polymerase II transcription subunit 20
N [auth u]Mediator of RNA polymerase II transcription subunit 21
O [auth v]Mediator of RNA polymerase II transcription subunit 22
P [auth w]Mediator of RNA polymerase II transcription subunit 31
Q [auth z]DNA-directed RNA polymerase II subunit RPB1
B [auth d]Mediator of RNA polymerase II transcription subunit 4
C [auth f]Mediator of RNA polymerase II transcription subunit 6
D [auth g]Mediator of RNA polymerase II transcription subunit 7
E [auth h]Mediator of RNA polymerase II transcription subunit 8
F [auth i]Mediator of RNA polymerase II transcription subunit 9
G [auth j]Mediator of RNA polymerase II transcription subunit 10
H [auth k]Mediator of RNA polymerase II transcription subunit 11
I [auth n]Mediator of RNA polymerase II transcription subunit 14

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth a]IPR019680Mediator complex, subunit Med1Domain
J [auth q]IPR019313Mediator complex, subunit Med17Family
K [auth r]IPR019095Mediator complex, subunit Med18Family
L [auth s]IPR013942Mediator complex, subunit Med19, fungiFamily
M [auth t]IPR013921Mediator complex, subunit Med20Family
M [auth t]IPR016532Mediator of RNA polymerase II transcription subunit 20Family
N [auth u]IPR037212Mediator complex, subunit Med7/Med21-likeHomologous Superfamily
N [auth u]IPR021384Mediator complex, subunit Med21Family
O [auth v]IPR009332Mediator of RNA polymerase II transcription subunit 22Family
O [auth v]IPR016530Mediator of RNA polymerase II transcription subunit 22, SaccharomycetesFamily
P [auth w]IPR008831Mediator complex, subunit Med31Family
P [auth w]IPR038089Mediator of RNA polymerase II, subunit Med31 superfamilyHomologous Superfamily
Q [auth z]IPR007081RNA polymerase Rpb1, domain 5Domain
Q [auth z]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
Q [auth z]IPR007075RNA polymerase Rpb1, domain 6Domain
Q [auth z]IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
Q [auth z]IPR007083RNA polymerase Rpb1, domain 4Domain
Q [auth z]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
Q [auth z]IPR006592RNA polymerase, N-terminalDomain
Q [auth z]IPR007066RNA polymerase Rpb1, domain 3Domain
Q [auth z]IPR007073RNA polymerase Rpb1, domain 7Domain
Q [auth z]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
Q [auth z]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
Q [auth z]IPR000722RNA polymerase, alpha subunitDomain
Q [auth z]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
Q [auth z]IPR007080RNA polymerase Rpb1, domain 1Domain
B [auth d]IPR019258Mediator complex, subunit Med4Family
C [auth f]IPR007018Mediator complex, subunit Med6Family
C [auth f]IPR016612Mediator complex, subunit Med6, fungiFamily
C [auth f]IPR038566Mediator complex, subunit Med6 superfamilyHomologous Superfamily
D [auth g]IPR037212Mediator complex, subunit Med7/Med21-likeHomologous Superfamily
D [auth g]IPR009244Mediator complex, subunit Med7Family
D [auth g]IPR044888Mediator complex, subunit Med7 superfmailyHomologous Superfamily
E [auth h]IPR019364Mediator complex, subunit Med8, fungi/metazoaFamily
F [auth i]IPR011425Mediator of RNA polymerase II transcription subunit 9Family
G [auth j]IPR019145Mediator complex, subunit Med10Family
H [auth k]IPR019404Mediator complex, subunit Med11Family
I [auth n]IPR013947Mediator complex, subunit Med14Family