7U02 | pdb_00007u02

Structure of the C. crescentus DriD C-domain bound to ssDNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth M]F_UNCLASSIFIEDe7u02M2 A: beta barrelsX: SH3H: Central WYL domain of RspWYL1 (From Topology)T: Central WYL domain of RspWYL1F: F_UNCLASSIFIEDECOD (1.6)
C [auth M]F_UNCLASSIFIEDe7u02M1 A: a+b two layersX: Alpha-beta plaitsH: RspWYL1 C-terminal domain (From Topology)T: RspWYL1 C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
A [auth B]F_UNCLASSIFIEDe7u02B2 A: beta barrelsX: SH3H: Central WYL domain of RspWYL1 (From Topology)T: Central WYL domain of RspWYL1F: F_UNCLASSIFIEDECOD (1.6)
A [auth B]F_UNCLASSIFIEDe7u02B1 A: a+b two layersX: Alpha-beta plaitsH: RspWYL1 C-terminal domain (From Topology)T: RspWYL1 C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
C [auth M]		PF13280WYL domain (WYL)WYL domainWYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. ...WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine [1], which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp [2]. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
C [auth M]		IPR028349Protein PafC-likeFamily
A [auth B],
C [auth M]		IPR051534CBASS antivirus and pafABC operon-associated proteinFamily
A [auth B],
C [auth M]		IPR026881WYL domainDomain