Annotations: 7TYR

Cryo-EM structure of the basal state of the Artemis:DNA-PKcs complex (see COMPND 13/14)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth C]	V-ATPase_C	e7tyrC01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: V-ATPase_C	ECOD (v295.2)
A	Uteroglobin	e7tyrA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Uteroglobin	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08163	DNA-dependent protein kinase catalytic subunit, CC3 (DNAPKcs_CC3)	DNA-dependent protein kinase catalytic subunit, CC3	-	Repeat
A	PF02260	FATC domain (FATC)	FATC domain	-	Family
A	PF00454	Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)	Phosphatidylinositol 3- and 4-kinase	-	Family
A	PF20502	DNA-dependent protein kinase catalytic subunit, CC1/2 (DNAPKcs_CC1-2)	DNA-dependent protein kinase catalytic subunit, CC1/2	-	Repeat
A	PF02259	FAT domain (FAT)	FAT domain	-	Repeat
A	PF19704	DNA-PKcs, CC5 (DNAPKcs_CC5)	DNA-PKcs, CC5	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C]	Protein artemis	DNA endonuclease activity endonuclease activity single-stranded DNA endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity 5'-3' exonuclease activity exonuclease activity DNA exonuclease activity 5'-3' DNA exonuclease activity DNA endonuclease activity endonuclease activity single-stranded DNA endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity 5'-3' exonuclease activity exonuclease activity DNA exonuclease activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA binding binding damaged DNA binding nucleic acid binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process interstrand cross-link repair macromolecule metabolic process DNA repair cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process interstrand cross-link repair macromolecule metabolic process DNA repair double-strand break repair double-strand break repair via nonhomologous end joining telomere organization chromosome organization telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis	protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen
A	DNA-dependent protein kinase catalytic subunit	RNA binding binding U3 snoRNA binding snoRNA binding nucleic acid binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity DNA-dependent protein kinase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups RNA binding binding U3 snoRNA binding snoRNA binding nucleic acid binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity DNA-dependent protein kinase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein binding protein domain specific binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding histone H2AXS139 kinase activity histone modifying activity histone kinase activity histone H2AX kinase activity protein serine kinase activity DNA binding double-stranded DNA binding enzyme binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of cellular process regulation of double-strand break repair cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of cellular process regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of double-strand break repair via nonhomologous end joining DNA repair double-strand break repair regulation of biological process positive regulation of double-strand break repair via nonhomologous end joining double-strand break repair via nonhomologous end joining biological regulation DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process positive regulation of double-strand break repair regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus regulation of metabolic process regulation of DNA metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of biological process negative regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process negative regulation of protein phosphorylation regulation of phosphorylation negative regulation of phosphorylation cell population proliferation regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation smooth muscle cell proliferation peptidyl-threonine phosphorylation regulation of cell cycle phase transition DNA damage checkpoint signaling signaling negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cell cycle phase transition signal transduction cell cycle regulation of cell cycle cell cycle process negative regulation of G1/S transition of mitotic cell cycle mitotic G1/S transition checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic G1 DNA damage checkpoint signaling mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle signal transduction in response to DNA damage G1/S transition of mitotic cell cycle mitotic cell cycle phase transition multicellular organismal process cellular developmental process regulation of developmental process homeostatic process cell development regulation of cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell differentiation cell differentiation anatomical structure development regulation of immune system process regulation of multicellular organismal process myeloid cell homeostasis erythrocyte homeostasis developmental process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation erythrocyte differentiation regulation of erythrocyte differentiation positive regulation of erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process positive regulation of myeloid cell differentiation regulation of hemopoiesis homeostasis of number of cells peptidyl-serine phosphorylation double-strand break repair via alternative nonhomologous end joining telomere organization chromosome organization telomere maintenance cellular component organization organelle organization telomere capping cellular component organization or biogenesis maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process RNA processing rRNA metabolic process positive regulation of response to biotic stimulus pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus cGAS/STING signaling pathway immune response-activating signaling pathway positive regulation of immune response positive regulation of immune system process innate immune response-activating signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus negative regulation of cGAS/STING signaling pathway defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus intracellular receptor signaling pathway negative regulation of signaling negative regulation of cytoplasmic pattern recognition receptor signaling pathway negative regulation of intracellular signal transduction regulation of cytoplasmic pattern recognition receptor signaling pathway negative regulation of cell communication positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction innate immune response response to external biotic stimulus regulation of signaling positive regulation of innate immune response defense response negative regulation of response to stimulus defense response to symbiont negative regulation of signal transduction negative regulation of immune system process regulation of cell communication regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation positive regulation of hemopoiesis positive regulation of leukocyte activation regulation of lymphocyte differentiation cell activation positive regulation of cell development positive regulation of multicellular organismal process positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation leukocyte differentiation regulation of lymphocyte activation positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of hematopoietic stem cell differentiation stem cell differentiation regulation of stem cell differentiation hematopoietic stem cell differentiation regulation of hematopoietic progenitor cell differentiation hematopoietic progenitor cell differentiation rhythmic process circadian rhythm regulation of circadian rhythm negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death positive regulation of protein metabolic process positive regulation of translation protein biosynthetic process post-transcriptional regulation of gene expression translation positive regulation of gene expression regulation of translation apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway regulation of epithelial cell proliferation epithelial cell proliferation regulation of platelet formation platelet morphogenesis cell morphogenesis regulation of cell morphogenesis positive regulation of platelet formation regulation of anatomical structure morphogenesis positive regulation of cell morphogenesis anatomical structure morphogenesis platelet formation anatomical structure formation involved in morphogenesis cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus immune system development immunoglobulin production somatic cell DNA recombination somatic recombination of immunoglobulin gene segments V(D)J recombination somatic diversification of immune receptors system development production of molecular mediator of immune response DNA recombination somatic diversification of immunoglobulins immunoglobulin V(D)J recombination somatic diversification of immune receptors via germline recombination within a single locus animal gross anatomical part developmental process organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis protein-RNA complex organization cellular component assembly cytosolic ribosome assembly protein-containing complex assembly small-subunit processome assembly cytosolic small ribosomal subunit assembly ribosome assembly	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle preribosome nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen organelle lumen ribonucleoprotein complex nuclear lumen catalytic complex transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups DNA-dependent protein kinase complex serine/threonine protein kinase complex chromosome, telomeric region chromosomal region nucleoplasm nonhomologous end joining complex intracellular protein-containing complex DNA repair complex DNA-dependent protein kinase-DNA ligase 4 complex protein-DNA complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C]	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
B [auth C]	IPR011084	DNA repair metallo-beta-lactamase	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR003151	PIK-related kinase, FAT	Domain
A	IPR046803	DNA-dependent protein kinase catalytic subunit, CC1/2	Domain
A	IPR046804	DNA-PKcs, N-terminal	Domain
A	IPR045581	DNA-dependent protein kinase catalytic subunit, CC5	Domain
A	IPR003152	FATC domain	Domain
A	IPR012582	DNA-dependent protein kinase catalytic subunit, CC3	Domain
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	Domain
A	IPR050517	DNA Damage Response and Repair Kinase	Family
A	IPR018936	Phosphatidylinositol 3-/4-kinase, conserved site	Conserved Site
A	IPR036940	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Homologous Superfamily
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR037706	DNA-dependent protein kinase catalytic subunit, catalytic domain	Domain
A	IPR014009	PIK-related kinase, FAT domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth C]	: Q96SD1	Omenn syndrome severe combined immunodeficiency due to DCLRE1C deficiency Reticuloendotheliosis, familial, with eosinophilia adrenal cortex carcinoma B-cell chronic lymphocytic leukemia malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma severe combined immunodeficiency astrocytic tumor hepatocellular carcinoma oligodendroglioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm lung cancer Omenn syndrome severe combined immunodeficiency due to DCLRE1C deficiency Reticuloendotheliosis, familial, with eosinophilia adrenal cortex carcinoma B-cell chronic lymphocytic leukemia malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma severe combined immunodeficiency astrocytic tumor hepatocellular carcinoma oligodendroglioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm lung cancer pancreatic ductal adenocarcinoma
A	: P78527	severe combined immunodeficiency due to DNA-PKcs deficiency hepatic encephalopathy adenoid cystic carcinoma severe combined immunodeficiency Massive Hepatic Necrosis poisoning hepatic coma lung adenocarcinoma prostate cancer salivary gland adenoid cystic carcinoma squamous cell carcinoma lung cancer malignant colon neoplasm metastatic melanoma non-small cell lung carcinoma severe combined immunodeficiency due to DNA-PKcs deficiency hepatic encephalopathy adenoid cystic carcinoma severe combined immunodeficiency Massive Hepatic Necrosis poisoning hepatic coma lung adenocarcinoma prostate cancer salivary gland adenoid cystic carcinoma squamous cell carcinoma lung cancer malignant colon neoplasm metastatic melanoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm breast carcinoma squamous cell lung carcinoma glioblastoma large cell medulloblastoma lung disease myopathy osteosarcoma astrocytic tumor cancer psoriasis colorectal adenocarcinoma drug-induced liver injury medulloblastoma nasopharyngeal carcinoma ovarian cancer attention deficit hyperactivity disorder, inattentive type