7TMO | pdb_00007tmo

V1 complex lacking subunit C from Saccharomyces cerevisiae, State 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth P]SCOP2B SuperfamilyARM repeat-like 8033221 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth P]C1-sete7tmoP1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
NC1-sete7tmoN1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
MC1-sete7tmoM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
LC1-sete7tmoL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
JC1-sete7tmoJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
HC1-sete7tmoH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
KC1-sete7tmoK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
IC1-sete7tmoI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
GC1-sete7tmoG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
FC1-sete7tmoF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
DC1-sete7tmoD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
BC1-sete7tmoB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
EC1-sete7tmoE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
CC1-sete7tmoC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)
AC1-sete7tmoA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
M1.10.287.3240 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)
I3.30.2320.30 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold ATP synthase, E subunit, C-terminalCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth P]PF11698V-ATPase subunit H (V-ATPase_H_C)V-ATPase subunit H- Repeat
O [auth P]PF03224V-ATPase subunit H (V-ATPase_H_N)V-ATPase subunit H- Repeat
PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
G, I, K
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
B, D, F
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
B, D, F
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
B, D, F
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
A, C, E
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A, C, E
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
A, C, E
PF16886ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit barrel-sandwich domainThis barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.
Domain
A, C, E
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O [auth P]V-type proton ATPase subunit H
V-type proton ATPase subunit F
V-type proton ATPase subunit D
H, J, L
V-type proton ATPase subunit G
G, I, K
V-type proton ATPase subunit E
B, D, F
Vacuolar proton pump subunit B
A, C, E
H(+)-transporting two-sector ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O [auth P]IPR004908ATPase, V1 complex, subunit HFamily
O [auth P]IPR016024Armadillo-type foldHomologous Superfamily
O [auth P]IPR011989Armadillo-like helicalHomologous Superfamily
O [auth P]IPR038497ATPase, V1 complex, subunit H, C-terminal domain superfamilyHomologous Superfamily
O [auth P]IPR011987ATPase, V1 complex, subunit H, C-terminalDomain
IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
IPR005772ATPase, V1 complex, subunit F, eukaryoticFamily
IPR008218ATPase, V1 complex, subunit FFamily
IPR002699ATPase, V1 complex, subunit DFamily
H, J, L
IPR005124Vacuolar (H+)-ATPase G subunitFamily
G, I, K
IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
G, I, K
IPR002842V-type ATPase subunit EFamily
B, D, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
B, D, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B, D, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
B, D, F
IPR005723ATPase, V1 complex, subunit BFamily
B, D, F
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
B, D, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
B, D, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
A, C, E
IPR036844Hint domain superfamilyHomologous Superfamily
A, C, E
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, C, E
IPR006142InteinDomain
A, C, E
IPR007868Hom-end-associated HintDomain
A, C, E
IPR004042Intein DOD homing endonuclease, central regionDomain
A, C, E
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, C, E
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, C, E
IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A, C, E
IPR006141Intein N-terminal splicing regionPTM
A, C, E
IPR003586Hint domain C-terminalDomain
A, C, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, C, E
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, C, E
IPR030934Intein C-terminal splicing regionConserved Site
A, C, E
IPR027434Homing endonucleaseHomologous Superfamily
A, C, E
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, C, E
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, C, E
IPR055190ATP synthase A/B type, C-terminal domainDomain
A, C, E
IPR003587Hint domain N-terminalDomain
A, C, E
IPR007869Homing endonuclease PI-SceDomain