7TBM

Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth A5]PF08801e7tbmA52 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
F [auth A6]PF08801e7tbmA62 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
S [auth D1]PF04097e7tbmD11 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
T [auth D2]PF04097e7tbmD21 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
U [auth D3]PF04097e7tbmD31 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
V [auth D4]PF04097e7tbmD41 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
W [auth D5]PF04097e7tbmD51 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
X [auth D6]PF04097e7tbmD61 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
Y [auth D7]PF04097e7tbmD71 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04097ECOD (1.6)
FC [auth S2]F_UNCLASSIFIEDe7tbmS22 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
FC [auth S2]PF03177e7tbmS21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)
HC [auth S4]F_UNCLASSIFIEDe7tbmS42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
HC [auth S4]PF03177e7tbmS41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)
EC [auth S1]F_UNCLASSIFIEDe7tbmS12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
EC [auth S1]PF03177e7tbmS11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)
GC [auth S3]F_UNCLASSIFIEDe7tbmS32 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
GC [auth S3]PF03177e7tbmS31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)
QC [auth V1]PF12110e7tbmV11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
RC [auth V2]PF12110e7tbmV21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
SC [auth V3]PF12110e7tbmV31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
TC [auth V4]PF12110e7tbmV41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
VC [auth W2]PF00400e7tbmW21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
WC [auth W3]PF00400e7tbmW31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
XC [auth W4]PF00400e7tbmW41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
UC [auth W1]PF00400e7tbmW11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
KD [auth a1]PF00400e7tbma11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
LD [auth a2]PF00400e7tbma21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
MD [auth a3]PF00400e7tbma31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
ND [auth a4]PF00400e7tbma41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
XD [auth g]PF12894e7tbmg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF12894ECOD (1.6)
YD [auth h]PF00270e7tbmh1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
ZD [auth i]PF10168e7tbmi1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF10168ECOD (1.6)
A [auth A1]PF08801e7tbmA12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
C [auth A3]PF08801e7tbmA32 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
MA [auth I1]PF11894e7tbmI12 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF11894ECOD (1.6)
OA [auth I3]PF11894e7tbmI32 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF11894ECOD (1.6)
PA [auth I4]PF11894e7tbmI42 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF11894ECOD (1.6)
QA [auth I5]PF11894e7tbmI52 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF11894ECOD (1.6)
NA [auth I2]PF11894e7tbmI22 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF11894ECOD (1.6)
SB [auth P1]F_UNCLASSIFIEDe7tbmP11 A: a+b two layersX: Alpha-beta plaitsH: Nup54 ferredoxin-like domain (From Topology)T: Nup54 ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
TB [auth P2]F_UNCLASSIFIEDe7tbmP21 A: a+b two layersX: Alpha-beta plaitsH: Nup54 ferredoxin-like domain (From Topology)T: Nup54 ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
UB [auth P3]F_UNCLASSIFIEDe7tbmP31 A: a+b two layersX: Alpha-beta plaitsH: Nup54 ferredoxin-like domain (From Topology)T: Nup54 ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
VB [auth P4]F_UNCLASSIFIEDe7tbmP41 A: a+b two layersX: Alpha-beta plaitsH: Nup54 ferredoxin-like domain (From Topology)T: Nup54 ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
WB [auth Q1]PF05172e7tbmQ11 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF05172ECOD (1.6)
XB [auth Q2]PF05172e7tbmQ21 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF05172ECOD (1.6)
YB [auth Q3]PF05172e7tbmQ31 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF05172ECOD (1.6)
ZB [auth Q4]PF05172e7tbmQ41 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF05172ECOD (1.6)
D [auth A4]PF08801e7tbmA42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
B [auth A2]PF08801e7tbmA22 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
IC [auth T1]PF04121e7tbmT11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
JC [auth T2]PF04121e7tbmT21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
KC [auth T3]PF04121e7tbmT31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
LC [auth T4]PF04121e7tbmT41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
NC [auth U2]PF04121e7tbmU21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
PC [auth U4]PF04121e7tbmU41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
MC [auth U1]PF04121e7tbmU11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
OC [auth U3]PF04121e7tbmU31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
AD [auth X3]PF07575e7tbmX31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
BD [auth X4]PF07575e7tbmX41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
YC [auth X1]PF07575e7tbmX11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
ZC [auth X2]PF07575e7tbmX21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
CD [auth Y1]PF00400e7tbmY11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
DD [auth Y2]PF00400e7tbmY21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
ED [auth Y3]PF00400e7tbmY31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
FD [auth Y4]PF00400e7tbmY41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
GD [auth Z1]PF11715e7tbmZ13 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF11715ECOD (1.6)
GD [auth Z1]PF22114e7tbmZ11 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: PF22114ECOD (1.6)
GD [auth Z1]F_UNCLASSIFIEDe7tbmZ12 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: F_UNCLASSIFIEDECOD (1.6)
HD [auth Z2]PF11715e7tbmZ23 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF11715ECOD (1.6)
HD [auth Z2]PF22114e7tbmZ22 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: PF22114ECOD (1.6)
HD [auth Z2]F_UNCLASSIFIEDe7tbmZ21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: F_UNCLASSIFIEDECOD (1.6)
ID [auth Z3]PF11715e7tbmZ31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF11715ECOD (1.6)
ID [auth Z3]PF22114e7tbmZ33 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: PF22114ECOD (1.6)
ID [auth Z3]F_UNCLASSIFIEDe7tbmZ32 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: F_UNCLASSIFIEDECOD (1.6)
JD [auth Z4]PF11715e7tbmZ42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF11715ECOD (1.6)
JD [auth Z4]PF22114e7tbmZ43 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: PF22114ECOD (1.6)
JD [auth Z4]F_UNCLASSIFIEDe7tbmZ41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: F_UNCLASSIFIEDECOD (1.6)
PD [auth b2]F_UNCLASSIFIEDe7tbmb21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
RD [auth b4]F_UNCLASSIFIEDe7tbmb41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
OD [auth b1]F_UNCLASSIFIEDe7tbmb11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
QD [auth b3]F_UNCLASSIFIEDe7tbmb31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
AE [auth j]PF04096e7tbmj1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology)T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-relatedF: PF04096ECOD (1.6)