7TBM

Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth A5]	PF08801	e7tbmA52	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
F [auth A6]	PF08801	e7tbmA62	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
S [auth D1]	PF04097	e7tbmD11	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
T [auth D2]	PF04097	e7tbmD21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
U [auth D3]	PF04097	e7tbmD31	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
V [auth D4]	PF04097	e7tbmD41	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
W [auth D5]	PF04097	e7tbmD51	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
X [auth D6]	PF04097	e7tbmD61	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
Y [auth D7]	PF04097	e7tbmD71	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
FC [auth S2]	F_UNCLASSIFIED	e7tbmS22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
FC [auth S2]	PF03177	e7tbmS21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
HC [auth S4]	F_UNCLASSIFIED	e7tbmS42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
HC [auth S4]	PF03177	e7tbmS41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
EC [auth S1]	F_UNCLASSIFIED	e7tbmS12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
EC [auth S1]	PF03177	e7tbmS11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
GC [auth S3]	F_UNCLASSIFIED	e7tbmS32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
GC [auth S3]	PF03177	e7tbmS31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
QC [auth V1]	PF12110	e7tbmV11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
RC [auth V2]	PF12110	e7tbmV21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
SC [auth V3]	PF12110	e7tbmV31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
TC [auth V4]	PF12110	e7tbmV41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
VC [auth W2]	PF00400	e7tbmW21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
WC [auth W3]	PF00400	e7tbmW31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
XC [auth W4]	PF00400	e7tbmW41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
UC [auth W1]	PF00400	e7tbmW11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
KD [auth a1]	PF00400	e7tbma11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
LD [auth a2]	PF00400	e7tbma21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
MD [auth a3]	PF00400	e7tbma31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ND [auth a4]	PF00400	e7tbma41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
XD [auth g]	PF12894	e7tbmg1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF12894	ECOD (1.6)
YD [auth h]	PF00270	e7tbmh1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00270	ECOD (1.6)
ZD [auth i]	PF10168	e7tbmi1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF10168	ECOD (1.6)
A [auth A1]	PF08801	e7tbmA12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
C [auth A3]	PF08801	e7tbmA32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
MA [auth I1]	PF11894	e7tbmI12	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
OA [auth I3]	PF11894	e7tbmI32	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
PA [auth I4]	PF11894	e7tbmI42	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
QA [auth I5]	PF11894	e7tbmI52	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
NA [auth I2]	PF11894	e7tbmI22	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
SB [auth P1]	F_UNCLASSIFIED	e7tbmP11	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
TB [auth P2]	F_UNCLASSIFIED	e7tbmP21	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
UB [auth P3]	F_UNCLASSIFIED	e7tbmP31	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
VB [auth P4]	F_UNCLASSIFIED	e7tbmP41	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
WB [auth Q1]	PF05172	e7tbmQ11	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
XB [auth Q2]	PF05172	e7tbmQ21	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
YB [auth Q3]	PF05172	e7tbmQ31	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
ZB [auth Q4]	PF05172	e7tbmQ41	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
D [auth A4]	PF08801	e7tbmA42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
B [auth A2]	PF08801	e7tbmA22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
IC [auth T1]	PF04121	e7tbmT11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
JC [auth T2]	PF04121	e7tbmT21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
KC [auth T3]	PF04121	e7tbmT31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
LC [auth T4]	PF04121	e7tbmT41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
NC [auth U2]	PF04121	e7tbmU21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
PC [auth U4]	PF04121	e7tbmU41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
MC [auth U1]	PF04121	e7tbmU11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
OC [auth U3]	PF04121	e7tbmU31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
AD [auth X3]	PF07575	e7tbmX31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
BD [auth X4]	PF07575	e7tbmX41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
YC [auth X1]	PF07575	e7tbmX11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
ZC [auth X2]	PF07575	e7tbmX21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
CD [auth Y1]	PF00400	e7tbmY11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
DD [auth Y2]	PF00400	e7tbmY21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ED [auth Y3]	PF00400	e7tbmY31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
FD [auth Y4]	PF00400	e7tbmY41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
GD [auth Z1]	PF11715	e7tbmZ13	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
GD [auth Z1]	PF22114	e7tbmZ11	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
GD [auth Z1]	F_UNCLASSIFIED	e7tbmZ12	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
HD [auth Z2]	PF11715	e7tbmZ23	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
HD [auth Z2]	PF22114	e7tbmZ22	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
HD [auth Z2]	F_UNCLASSIFIED	e7tbmZ21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
ID [auth Z3]	PF11715	e7tbmZ31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
ID [auth Z3]	PF22114	e7tbmZ33	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
ID [auth Z3]	F_UNCLASSIFIED	e7tbmZ32	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
JD [auth Z4]	PF11715	e7tbmZ42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
JD [auth Z4]	PF22114	e7tbmZ43	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
JD [auth Z4]	F_UNCLASSIFIED	e7tbmZ41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
PD [auth b2]	F_UNCLASSIFIED	e7tbmb21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
RD [auth b4]	F_UNCLASSIFIED	e7tbmb41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
OD [auth b1]	F_UNCLASSIFIED	e7tbmb11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
QD [auth b3]	F_UNCLASSIFIED	e7tbmb31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
AE [auth j]	PF04096	e7tbmj1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology)	T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related	F: PF04096	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7TBM

Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage