7TBM

Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BD [auth X4]	PF07575	e7tbmX41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
YC [auth X1]	PF07575	e7tbmX11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
ZC [auth X2]	PF07575	e7tbmX21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
AD [auth X3]	PF07575	e7tbmX31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
DD [auth Y2]	PF00400	e7tbmY21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ED [auth Y3]	PF00400	e7tbmY31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
CD [auth Y1]	PF00400	e7tbmY11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
FD [auth Y4]	PF00400	e7tbmY41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
A [auth A1]	PF08801	e7tbmA12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
C [auth A3]	PF08801	e7tbmA32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
MA [auth I1]	PF11894	e7tbmI12	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
NA [auth I2]	PF11894	e7tbmI22	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
OA [auth I3]	PF11894	e7tbmI32	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
PA [auth I4]	PF11894	e7tbmI42	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
QA [auth I5]	PF11894	e7tbmI52	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
SB [auth P1]	F_UNCLASSIFIED	e7tbmP11	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
TB [auth P2]	F_UNCLASSIFIED	e7tbmP21	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
VB [auth P4]	F_UNCLASSIFIED	e7tbmP41	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
UB [auth P3]	F_UNCLASSIFIED	e7tbmP31	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
WB [auth Q1]	PF05172	e7tbmQ11	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
YB [auth Q3]	PF05172	e7tbmQ31	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
ZB [auth Q4]	PF05172	e7tbmQ41	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
XB [auth Q2]	PF05172	e7tbmQ21	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
B [auth A2]	PF08801	e7tbmA22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
D [auth A4]	PF08801	e7tbmA42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
EC [auth S1]	F_UNCLASSIFIED	e7tbmS12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
EC [auth S1]	PF03177	e7tbmS11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
GC [auth S3]	F_UNCLASSIFIED	e7tbmS32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
GC [auth S3]	PF03177	e7tbmS31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
HC [auth S4]	F_UNCLASSIFIED	e7tbmS42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
HC [auth S4]	PF03177	e7tbmS41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
FC [auth S2]	F_UNCLASSIFIED	e7tbmS22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
FC [auth S2]	PF03177	e7tbmS21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
JC [auth T2]	PF04121	e7tbmT21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
LC [auth T4]	PF04121	e7tbmT41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
IC [auth T1]	PF04121	e7tbmT11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
KC [auth T3]	PF04121	e7tbmT31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
NC [auth U2]	PF04121	e7tbmU21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
OC [auth U3]	PF04121	e7tbmU31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
PC [auth U4]	PF04121	e7tbmU41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
MC [auth U1]	PF04121	e7tbmU11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
RC [auth V2]	PF12110	e7tbmV21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
SC [auth V3]	PF12110	e7tbmV31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
TC [auth V4]	PF12110	e7tbmV41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
QC [auth V1]	PF12110	e7tbmV11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
WC [auth W3]	PF00400	e7tbmW31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
UC [auth W1]	PF00400	e7tbmW11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
VC [auth W2]	PF00400	e7tbmW21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
XC [auth W4]	PF00400	e7tbmW41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
HD [auth Z2]	PF11715	e7tbmZ23	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
HD [auth Z2]	PF22114	e7tbmZ22	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
HD [auth Z2]	F_UNCLASSIFIED	e7tbmZ21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
ID [auth Z3]	PF11715	e7tbmZ31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
ID [auth Z3]	PF22114	e7tbmZ33	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
ID [auth Z3]	F_UNCLASSIFIED	e7tbmZ32	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
GD [auth Z1]	PF11715	e7tbmZ13	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
GD [auth Z1]	PF22114	e7tbmZ11	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
GD [auth Z1]	F_UNCLASSIFIED	e7tbmZ12	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
JD [auth Z4]	PF11715	e7tbmZ42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
JD [auth Z4]	PF22114	e7tbmZ43	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
JD [auth Z4]	F_UNCLASSIFIED	e7tbmZ41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
KD [auth a1]	PF00400	e7tbma11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
MD [auth a3]	PF00400	e7tbma31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ND [auth a4]	PF00400	e7tbma41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
LD [auth a2]	PF00400	e7tbma21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
E [auth A5]	PF08801	e7tbmA52	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
F [auth A6]	PF08801	e7tbmA62	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
QD [auth b3]	F_UNCLASSIFIED	e7tbmb31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
RD [auth b4]	F_UNCLASSIFIED	e7tbmb41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
OD [auth b1]	F_UNCLASSIFIED	e7tbmb11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
PD [auth b2]	F_UNCLASSIFIED	e7tbmb21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
XD [auth g]	PF12894	e7tbmg1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF12894	ECOD (1.6)
YD [auth h]	PF00270	e7tbmh1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00270	ECOD (1.6)
ZD [auth i]	PF10168	e7tbmi1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF10168	ECOD (1.6)
AE [auth j]	PF04096	e7tbmj1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology)	T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related	F: PF04096	ECOD (1.6)
S [auth D1]	PF04097	e7tbmD11	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
T [auth D2]	PF04097	e7tbmD21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
U [auth D3]	PF04097	e7tbmD31	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
W [auth D5]	PF04097	e7tbmD51	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
X [auth D6]	PF04097	e7tbmD61	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
Y [auth D7]	PF04097	e7tbmD71	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
V [auth D4]	PF04097	e7tbmD41	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

7TBM

Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage