7T54
Cryo-EM structure of ATP-bound PCAT1 in the outward-facing conformation
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ABC transporter transmembrane region-like | 8101173 | 3001546 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8101175 | 3002020 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cysteine proteinases | 8101171 | 3001808 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ABC transporter transmembrane region-like | 8101173 | 3001546 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cysteine proteinases | 8101171 | 3001808 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8101175 | 3002020 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ABC_membrane | e7t54A2 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC exporter transmembrane domain fold (From Topology) | T: Type I ABC exporter transmembrane domain fold | F: ABC_membrane | ECOD (1.6) |
A | Peptidase_C39 | e7t54A3 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C39 | ECOD (1.6) |
A | ABC_tran_1 | e7t54A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran_1 | ECOD (1.6) |
B | ABC_membrane | e7t54B3 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC exporter transmembrane domain fold (From Topology) | T: Type I ABC exporter transmembrane domain fold | F: ABC_membrane | ECOD (1.6) |
B | Peptidase_C39 | e7t54B2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C39 | ECOD (1.6) |
B | ABC_tran_1 | e7t54B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00664 | ABC transporter transmembrane region (ABC_membrane) | ABC transporter transmembrane region | - | Family | |
PF03412 | Peptidase C39 family (Peptidase_C39) | Peptidase C39 family | - | Family | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005897 | Peptidase C39, ABC-type bacteriocin transporter | Family | |
IPR005074 | Peptidase C39, bacteriocin processing | Domain | |
IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
IPR036640 | ABC transporter type 1, transmembrane domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR011527 | ABC transporter type 1, transmembrane domain | Domain | |
IPR039421 | Type 1 protein exporter | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | Lipid exporter family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | peptidase-containing ABC transporter PCAT1, outward facing conformation |