7T3C | pdb_00007t3c

GATOR1-RAG-RAGULATOR - Dual Complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth K]SCOP2B SuperfamilyRas-like P-loop GTPases 8093372 3002022 SCOP2B (2022-06-29)
P [auth K]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
I [auth D]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8093374 3001810 SCOP2B (2022-06-29)
I [auth D]SCOP2B SuperfamilyRas-like P-loop GTPases 8093372 3002022 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8092495 3001810 SCOP2B (2022-06-29)
L [auth N]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8088845 3001810 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8040242 3001810 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyRas-like P-loop GTPases 8093371 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
P [auth K]Gtr1_RagA_C_1e7t3cK2 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_C_1ECOD (1.6)
P [auth K]Gtr1_RagA_Ne7t3cK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
I [auth D]Gtr1_RagA_C_1e7t3cD2 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_C_1ECOD (1.6)
I [auth D]Gtr1_RagA_Ne7t3cD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
N [auth P]Robl_LC7e7t3cP1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
F [auth I]Robl_LC7e7t3cI1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
M [auth Q]LAMTOR5e7t3cQ1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: LAMTOR5ECOD (1.6)
E [auth J]LAMTOR5e7t3cJ1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: LAMTOR5ECOD (1.6)
L [auth N]Robl_LC7e7t3cN1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
D [auth G]Robl_LC7e7t3cG1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
K [auth O]MAPKK1_Inte7t3cO1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: MAPKK1_IntECOD (1.6)
C [auth H]MAPKK1_Inte7t3cH1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: MAPKK1_IntECOD (1.6)
Q [auth L]Gtr1_RagA_Ce7t3cL2 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_CECOD (1.6)
Q [auth L]Gtr1_RagA_Ne7t3cL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)
J [auth E]Gtr1_RagA_Ce7t3cE1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Gtr1_RagA_CECOD (1.6)
J [auth E]Gtr1_RagA_Ne7t3cE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Gtr1_RagA_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth D],
P [auth K]
PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
H [auth C]PF03666Nitrogen Permease regulator of amino acid transport activity 3 (NPR3)Nitrogen Permease regulator of amino acid transport activity 3- Family
E [auth J],
M [auth Q]
PF16672Ragulator complex protein LAMTOR5 (LAMTOR5)Ragulator complex protein LAMTOR5Domain
D [auth G],
L [auth N]
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
C [auth H],
K [auth O]
PF08923Mitogen-activated protein kinase kinase 1 interacting (MAPKK1_Int)Mitogen-activated protein kinase kinase 1 interactingMitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a tw ...Mitogen-activated protein kinase kinase 1 interacting protein is a small subcellular adaptor protein required for MAPK signaling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer [1].
Domain
B [auth A]PF12257Vacuolar membrane-associated protein Iml1, N-terminal domain (IML1)Vacuolar membrane-associated protein Iml1, N-terminal domainProteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subu ...Proteins in this family contain a DEP domain, which is a globular domain of about 80 residues. This entry includes vacuolar membrane-associated protein Iml1 and DEP domain-containing protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 is a subunit of both the SEA (Seh1-associated) and Iml1 complexes (Iml1-Npr2-Npr3). SEA complex is associates dynamically with the vacuole and is involved in autophagy [1, 2]. Iml1 complex is required for non-nitrogen-starvation (NNS)-induced autophagy [3].
Domain
B [auth A]PF00610Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) (DEP)Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) prot ...The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting [4-5]. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit [6-7].
Domain
Q [auth L]PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
J [auth E]PF04670Gtr1/RagA G protein conserved region (Gtr1_RagA)Gtr1/RagA G protein conserved regionGTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is ...GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B [1,2,3,4].
Domain
A [auth B]PF06218Nitrogen permease regulator 2 (NPR2)Nitrogen permease regulator 2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth D],
P [auth K]
Ras-related GTP-binding protein A
H [auth C]GATOR complex protein NPRL3
G [auth F],
O [auth M]
Ragulator complex protein LAMTOR1
F [auth I],
N [auth P]
Ragulator complex protein LAMTOR4-
E [auth J],
M [auth Q]
Ragulator complex protein LAMTOR5-
D [auth G],
L [auth N]
Ragulator complex protein LAMTOR2
C [auth H],
K [auth O]
Ragulator complex protein LAMTOR3
B [auth A]GATOR complex protein DEPDC5
Q [auth L]Ras-related GTP-binding protein C
J [auth E]Ras-related GTP-binding protein C
A [auth B]GATOR complex protein NPRL2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth D],
P [auth K]
IPR039397RagA/BFamily
I [auth D],
P [auth K]
IPR006762Gtr1/RagA G proteinFamily
I [auth D],
P [auth K]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth C]IPR005365Nitrogen permease regulator 3Family
H [auth C]IPR056603GATOR1 complex protein NPRL3, C-terminal HTH domainDomain
G [auth F],
O [auth M]
IPR028209LAMTOR1/MEH1Family
F [auth I],
N [auth P]
IPR034601Ragulator complex protein LAMTOR4Family
E [auth J],
M [auth Q]
IPR024135Ragulator complex protein LAMTOR5Family
D [auth G],
L [auth N]
IPR037587Ragulator complex protein LAMTOR2-likeFamily
D [auth G],
L [auth N]
IPR004942Roadblock/LAMTOR2 domainDomain
C [auth H],
K [auth O]
IPR015019Ragulator complex protein LAMTOR3Family
B [auth A]IPR048255Vacuolar membrane-associated protein Iml1, N-terminal domainDomain
B [auth A]IPR000591DEP domainDomain
B [auth A]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
B [auth A]IPR045838DEPDC5, C-terminalDomain
B [auth A]IPR055213IML1, N-terminal double psi beta-barrel domainDomain
B [auth A]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
B [auth A]IPR027244Vacuolar membrane-associated protein Iml1Family
Q [auth L]IPR006762Gtr1/RagA G proteinFamily
Q [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Q [auth L]IPR039400RagC/DFamily
J [auth E]IPR006762Gtr1/RagA G proteinFamily
J [auth E]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
J [auth E]IPR039400RagC/DFamily
A [auth B]IPR009348Nitrogen permease regulator 2-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth D],
P [auth K]
PharosQ7L523
H [auth C]PharosQ12980
G [auth F],
O [auth M]
PharosQ6IAA8
F [auth I],
N [auth P]
PharosQ0VGL1
E [auth J],
M [auth Q]
PharosO43504
D [auth G],
L [auth N]
PharosQ9Y2Q5
C [auth H],
K [auth O]
PharosQ9UHA4
B [auth A]PharosO75140
Q [auth L]PharosQ9HB90
J [auth E]PharosQ9HB90
A [auth B]PharosQ8WTW4