7T17 | pdb_00007t17

Zika Virus asymmetric unit bound with IgM antibody DH1017 Fab fragment


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth E]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
H [auth C]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth E]Flavi_glycop_Ce7t17E2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
I [auth E]Flavi_glycoprote7t17E1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
H [auth C]Flavi_glycop_Ce7t17C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
H [auth C]Flavi_glycoprote7t17C2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
G [auth A]Flavi_glycop_Ce7t17A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
G [auth A]Flavi_glycoprote7t17A2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
F [auth G]V-set_3e7t17G1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)
D [auth K]V-set_3e7t17K1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)
E [auth F]V-set_8e7t17F1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
C [auth J]V-set_8e7t17J1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
B [auth I]C1-sete7t17I1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
A [auth H]C1-set_1e7t17H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth K],
F [auth G]
Light ChainIGLV1 Lambdacore proteinSAbDab (2025-11-28)
C [auth J],
E [auth F]
Heavy ChainIGHV4 -core proteinSAbDab (2025-11-28)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth A],
H [auth C],
I [auth E]
PF00869Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot)Flavivirus glycoprotein, central and dimerisation domainsDomain
G [auth A],
H [auth C],
I [auth E]
PF02832Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C)Flavivirus glycoprotein, immunoglobulin-like domainDomain
B [auth I]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A [auth H]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth A],
H [auth C],
I [auth E]
Core protein
D [auth K],
F [auth G]
DH1017.IgM IgL---
C [auth J],
E [auth F]
DH1017.IgM IgH---
B [auth I]DH1017.IgM LambdaC constant domain
A [auth H]DH1017.IgM FabC constant domain-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth A],
H [auth C],
I [auth E]
IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR014756Immunoglobulin E-setHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR001122Capsid protein C, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR014412Genome polyprotein, FlavivirusFamily
G [auth A],
H [auth C],
I [auth E]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR026490mRNA cap 0/1 methyltransferaseDomain
G [auth A],
H [auth C],
I [auth E]
IPR009003Peptidase S1, PA clanHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR001650Helicase, C-terminal domain-likeDomain
G [auth A],
H [auth C],
I [auth E]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
G [auth A],
H [auth C],
I [auth E]
IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR000752Flavivirus non-structural protein NS2ADomain
G [auth A],
H [auth C],
I [auth E]
IPR047530RNA-dependent RNA polymerase, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
G [auth A],
H [auth C],
I [auth E]
IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
G [auth A],
H [auth C],
I [auth E]
IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR000069Envelope glycoprotein M, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
G [auth A],
H [auth C],
I [auth E]
IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR000404Flavivirus non-structural protein NS4ADomain
G [auth A],
H [auth C],
I [auth E]
IPR000487Non-structural protein NS2B, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR001528Flavivirus non-structural protein NS4BDomain
G [auth A],
H [auth C],
I [auth E]
IPR001157Non-structural protein NS1, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
G [auth A],
H [auth C],
I [auth E]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
G [auth A],
H [auth C],
I [auth E]
IPR002535Flavivirus polyprotein propeptideDomain
G [auth A],
H [auth C],
I [auth E]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth I]IPR003597Immunoglobulin C1-setDomain
B [auth I]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth I]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth I]IPR007110Immunoglobulin-like domainDomain
B [auth I]IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B [auth I]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth H]IPR003597Immunoglobulin C1-setDomain
A [auth H]IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth H]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth H]IPR013106Immunoglobulin V-set domainDomain
A [auth H]IPR003599Immunoglobulin domain subtypeDomain
A [auth H]IPR007110Immunoglobulin-like domainDomain
A [auth H]IPR050380Immune Recognition and Response ModulatorsFamily
A [auth H]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site