7SZ0

Cryo-EM structure of the extracellular module of the full-length EGFR L834R bound to EGF. "tips-juxtaposed" conformation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGrowth factor receptor domain-like8038763 3000398 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyL domain-like8038760 3001010 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyL domain-like8038760 3001010 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyGrowth factor receptor domain-like8038763 3000398 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyEGF/Laminin-like8033508 3000412 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyEGF/Laminin-like8033508 3000412 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01030e7sz0A2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF01030ECOD (1.6)
APF00757e7sz0A3 A: few secondary structure elementsX: EGF-likeH: Growth factor receptor domain (From Topology)T: Growth factor receptor domainF: PF00757ECOD (1.6)
APF14843e7sz0A4 A: few secondary structure elementsX: EGF-likeH: Growth factor receptor domain (From Topology)T: Growth factor receptor domainF: PF14843ECOD (1.6)
C [auth B]PF01030e7sz0B2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF01030ECOD (1.6)
C [auth B]PF00757e7sz0B3 A: few secondary structure elementsX: EGF-likeH: Growth factor receptor domain (From Topology)T: Growth factor receptor domainF: PF00757ECOD (1.6)
C [auth B]PF14843e7sz0B4 A: few secondary structure elementsX: EGF-likeH: Growth factor receptor domain (From Topology)T: Growth factor receptor domainF: PF14843ECOD (1.6)
B [auth C]PF00008e7sz0C1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: PF00008ECOD (1.6)
DPF00008e7sz0D1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: PF00008ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth B]
PF00757Furin-like cysteine rich region (Furin-like)Furin-like cysteine rich region- Domain
A,
C [auth B]
PF01030Receptor L domain (Recep_L_domain)Receptor L domain- Repeat
A,
C [auth B]
PF14843Growth factor receptor domain IV (GF_recep_IV)Growth factor receptor domain IVThis is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1].Domain
B [auth C],
D
PF00008EGF-like domain (EGF)EGF-like domainThere is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ...There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
C [auth B]
Epidermal growth factor receptor
B [auth C],
D
Epidermal growth factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
C [auth B]
IPR016245Tyrosine protein kinase, EGF/ERB/XmrK receptorFamily
A,
C [auth B]
IPR020635Tyrosine-protein kinase, catalytic domainDomain
A,
C [auth B]
IPR000719Protein kinase domainDomain
A,
C [auth B]
IPR032778Growth factor receptor domain 4Domain
A,
C [auth B]
IPR006212Furin-like repeatRepeat
A,
C [auth B]
IPR017441Protein kinase, ATP binding siteBinding Site
A,
C [auth B]
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
A,
C [auth B]
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
A,
C [auth B]
IPR008266Tyrosine-protein kinase, active siteActive Site
A,
C [auth B]
IPR036941Receptor L-domain superfamilyHomologous Superfamily
A,
C [auth B]
IPR049328Epidermal growth factor receptor-like, transmembrane-juxtamembrane segmentDomain
A,
C [auth B]
IPR000494Receptor L-domainDomain
A,
C [auth B]
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A,
C [auth B]
IPR006211Furin-like cysteine-rich domainDomain
B [auth C],
D
IPR018097EGF-like calcium-binding, conserved siteConserved Site
B [auth C],
D
IPR000033LDLR class B repeatRepeat
B [auth C],
D
IPR001881EGF-like calcium-binding domainDomain
B [auth C],
D
IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
B [auth C],
D
IPR000742EGF-like domainDomain
B [auth C],
D
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
B [auth C],
D
IPR016317Pro-epidermal growth factorFamily
B [auth C],
D
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A,
C [auth B]
PharosP00533
B [auth C],
D
PharosP01133