7SYS | pdb_00007sys

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8097826 3001397 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
K [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
O [auth N]SCOP2B SuperfamilyL30e-like 8063980 3001739 SCOP2B (2022-06-29)
P [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052971 3001284 SCOP2B (2022-06-29)
P [auth O]SCOP2B SuperfamilyHomeodomain-like 8052970 3000001 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilyTranslational machinery components 8097824 3000571 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053140 3000068 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
BA [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
FA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052584 3000068 SCOP2B (2022-06-29)
GA [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyeIF2alpha middle domain-like 8042150 3001761 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyNucleic acid-binding proteins 8042151 3000135 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
EA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
CA [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053150 3000068 SCOP2B (2022-06-29)
W [auth V]SCOP2B SuperfamilyRibosomal protein S10 8097814 3001336 SCOP2B (2022-06-29)
V [auth U]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
S [auth R]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth A]eIF-1ae7sysA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: eIF-1aECOD (1.6)
C [auth B]Ribosomal_S2_2e7sysB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
D [auth C]Ribosomal_S3Ae_Ne7sysC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
D [auth C]Ribosomal_S3Ae_Ce7sysC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
F [auth E]Ribosomal_S3_Ce7sysE1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
F [auth E]KH_2_3e7sysE2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
G [auth F]Ribosomal_S4ee7sysF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
G [auth F]40S_S4_Ce7sysF1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
G [auth F]RS4NTe7sysF3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
I [auth H]Ribosomal_S6ee7sysH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
J [auth I]Ribosomal_S7e_Ne7sysI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
J [auth I]Ribosomal_S7e_C_1e7sysI1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
K [auth J]Ribosomal_S8ee7sysJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
L [auth K]S4e7sysK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
N [auth M]Ribosomal_S17_1e7sysM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
O [auth N]Ribosomal_L7Aee7sysN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
P [auth O]Ribosomal_S13_Ne7sysO2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
P [auth O]Ribosomal_S15_2e7sysO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
Q [auth P]Ribosomal_S11e7sysP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
T [auth S]Ribosomal_S17ee7sysS1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
U [auth T]Ribosomal_S13e7sysT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
X [auth W]Ribosomal_S21ee7sysW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
Y [auth X]Ribosomal_S8_N_1e7sysX1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
Y [auth X]Ribosomal_S8_C_1e7sysX2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
AA [auth Z]Ribosomal_S24ee7sysZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
BA [auth a]Ribosomal_S25e7sysa1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
DA [auth c]Ribosomal_S27ee7sysc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
FA [auth e]Ribosomal_S14_2e7syse1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
GA [auth f]Ribosomal_S30e7sysf1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
IA [auth h]DUF1899e7sysh1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
JA [auth j]S1_1e7sysj2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
JA [auth j]EIF_2_alpha_Ne7sysj1 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
KA [auth n]Ribosomal_L41e7sysn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
H [auth G]Ribosomal_S7_1e7sysG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
E [auth D]Ribosomal_S5_C_1e7sysD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
E [auth D]Ribosomal_S5_3e7sysD3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
E [auth D]Ribosomal_S5_2e7sysD1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
HA [auth g]Ribosomal_S27e7sysg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
EA [auth d]Ribosomal_S28ee7sysd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
CA [auth b]Ribosomal_S26ee7sysb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
Z [auth Y]Ribosom_S12_S23e7sysY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
W [auth V]Ribosomal_S10_1e7sysV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
V [auth U]Ribosomal_S19ee7sysU1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
S [auth R]Ribosomal_S9e7sysR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
R [auth Q]Ribosomal_S19e7sysQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
M [auth L]S10_plectine7sysL1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
AA [auth Z]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
E [auth D]3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Domain
C [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth B]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
C [auth B]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
D [auth C]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
F [auth E]PF07650KH domain (KH_2)KH domainDomain
F [auth E]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
F [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
G [auth F]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
G [auth F]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
G [auth F]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
G [auth F]PF00467KOW motif (KOW)KOW motif- Family
I [auth H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth H]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
K [auth J]PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
K [auth J]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Domain
K [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
L [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
N [auth M]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
N [auth M]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
O [auth N]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
O [auth N]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
P [auth O]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain
P [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
Q [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
U [auth T]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
X [auth W]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
Y [auth X]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
AA [auth Z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
H [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
H [auth G]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
Z [auth Y]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
W [auth V]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
V [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
S [auth R]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
R [auth Q]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
M [auth L]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth A]Eukaryotic translation initiation factor 1A, X-chromosomal
C [auth B]uS2 (SA)
D [auth C]eS1
F [auth E]uS3
G [auth F]eS4 (S4 X isoform)
I [auth H]eS6
J [auth I]eS7
K [auth J]eS8
L [auth K]uS4
N [auth M]uS17
O [auth N]eS12
P [auth O]uS15
Q [auth P]uS11
T [auth S]eS17
U [auth T]uS13
X [auth W]eS21
Y [auth X]uS8
AA [auth Z]eS24
BA [auth a]eS25
DA [auth c]eS27
FA [auth e]uS14
GA [auth f]eS30
IA [auth h]Receptor for Activated C Kinase 1 (RACK1)
JA [auth j]Eukaryotic translation initiation factor 2 subunit 1
KA [auth n]eL41
MA [auth i]Met-tRNA-i-Met---
H [auth G]uS7
E [auth D]uS5
LA [auth z]HCV IRES---
HA [auth g]eS31
EA [auth d]eS28
CA [auth b]eS26
Z [auth Y]uS12
W [auth V]uS10
V [auth U]eS19
S [auth R]uS9
R [auth Q]uS19
M [auth L]eS10 -
A [auth 2]18S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
B [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth A]IPR006196RNA-binding domain, S1, IF1 typeDomain
B [auth A]IPR001253Translation initiation factor 1A (eIF-1A)Family
C [auth B]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth B]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
C [auth B]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
C [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
D [auth C]IPR001593Small ribosomal subunit protein eS1Family
D [auth C]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth C]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
F [auth E]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
F [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
F [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth E]IPR004044K Homology domain, type 2Domain
F [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
F [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
F [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
G [auth F]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
G [auth F]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
G [auth F]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
G [auth F]IPR002942RNA-binding S4 domainDomain
G [auth F]IPR013845Small ribosomal subunit protein eS4, central regionDomain
G [auth F]IPR000876Small ribosomal subunit protein eS4Family
G [auth F]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth F]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
G [auth F]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
G [auth F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth F]IPR005824KOWDomain
I [auth H]IPR014401Small ribosomal subunit protein eS6-likeFamily
I [auth H]IPR001377Small ribosomal subunit protein eS6Family
I [auth H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
J [auth I]IPR000554Small ribosomal subunit protein eS7Family
J [auth I]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
K [auth J]IPR001047Small ribosomal subunit protein eS8Family
K [auth J]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
K [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
L [auth K]IPR002942RNA-binding S4 domainDomain
L [auth K]IPR022801Small ribosomal subunit protein uS4Family
L [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
L [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
L [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
L [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth M]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
N [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth M]IPR000266Small ribosomal subunit protein uS17Family
N [auth M]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
N [auth M]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
O [auth N]IPR000530Small ribosomal subunit protein eS12Family
O [auth N]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
O [auth N]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
O [auth N]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
P [auth O]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
P [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
P [auth O]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
P [auth O]IPR000589Small ribosomal subunit protein uS15Family
Q [auth P]IPR001971Small ribosomal subunit protein uS11Family
Q [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Q [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
T [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
T [auth S]IPR001210Small ribosomal subunit protein eS17Family
T [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
U [auth T]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
U [auth T]IPR001892Small ribosomal subunit protein uS13Family
U [auth T]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
U [auth T]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
X [auth W]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
X [auth W]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
X [auth W]IPR001931Small ribosomal subunit protein eS21Family
Y [auth X]IPR000630Small ribosomal subunit protein uS8Family
Y [auth X]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
Y [auth X]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
AA [auth Z]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
AA [auth Z]IPR001976Small ribosomal subunit protein eS24Family
AA [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth Z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
BA [auth a]IPR004977Small ribosomal subunit protein eS25Family
BA [auth a]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
DA [auth c]IPR000592Small ribosomal subunit protein eS27Family
DA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth e]IPR001209Small ribosomal subunit protein uS14Family
FA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
FA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
FA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
GA [auth f]IPR039415Ubiquitin-like protein FUBIDomain
GA [auth f]IPR019956Ubiquitin domainDomain
GA [auth f]IPR019954Ubiquitin conserved siteConserved Site
GA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth f]IPR000626Ubiquitin-like domainDomain
GA [auth f]IPR006846Small ribosomal subunit protein eS30Family
IA [auth h]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth h]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth h]IPR045223Small ribosomal subunit protein RACK1-likeFamily
IA [auth h]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IA [auth h]IPR001680WD40 repeatRepeat
IA [auth h]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth j]IPR044126IF2a, S1-like domainDomain
JA [auth j]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
JA [auth j]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
JA [auth j]IPR003029S1 domainDomain
JA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JA [auth j]IPR011488Translation initiation factor 2, alpha subunitFamily
KA [auth n]IPR007836Large ribosomal subunit protein eS32Family
H [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
H [auth G]IPR000235Small ribosomal subunit protein uS7Family
H [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
H [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
E [auth D]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
E [auth D]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
E [auth D]IPR039699Large ribosomal subunit protein uL30Family
E [auth D]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
E [auth D]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
E [auth D]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
E [auth D]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
HA [auth g]IPR019954Ubiquitin conserved siteConserved Site
HA [auth g]IPR000626Ubiquitin-like domainDomain
HA [auth g]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
HA [auth g]IPR002906Small ribosomal subunit protein eS31Domain
HA [auth g]IPR019956Ubiquitin domainDomain
HA [auth g]IPR050158Ubiquitin and ubiquitin-likeFamily
HA [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth g]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
EA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth d]IPR000289Small ribosomal subunit protein eS28Family
CA [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
CA [auth b]IPR000892Small ribosomal subunit protein eS26Family
CA [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
Z [auth Y]IPR006032Small ribosomal subunit protein uS12Family
Z [auth Y]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth Y]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
W [auth V]IPR001848Small ribosomal subunit protein uS10Family
W [auth V]IPR027486Small ribosomal subunit protein uS10 domainDomain
W [auth V]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
W [auth V]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
W [auth V]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
V [auth U]IPR001266Small ribosomal subunit protein eS19Family
V [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth U]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
V [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
S [auth R]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
S [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
S [auth R]IPR000754Small ribosomal subunit protein uS9Family
S [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
R [auth Q]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth Q]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth Q]IPR002222Small ribosomal subunit protein uS19Family
R [auth Q]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
M [auth L]IPR037447Small ribosomal subunit protein eS10Family
M [auth L]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth L]IPR005326Plectin/eS10, N-terminalDomain