7SX6 | pdb_00007sx6

Crystal structure of broadly neutralizing antibody N49P9.3 Fab in complex with HIV-1 Clade A/E strain 93TH057 gp120 core

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth G]	SCOP2B Superfamily	gp120 core	8096276	3001390	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	gp120 core	8096276	3001390	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth C]	WD40	e7sx6C1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
C [auth L]	WD40	e7sx6L1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
E [auth B]	WD40	e7sx6B1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
B [auth H]	WD40	e7sx6H1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
A [auth G]	WD40	e7sx6G1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
D [auth A]	WD40	e7sx6A1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
E [auth B]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
B [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
A [auth G]	2.170.40.20	Mainly Beta	Beta Complex	HIV Envelope Protein Gp120	Chain G	CATH (utative)
D [auth A]	2.170.40.20	Mainly Beta	Beta Complex	HIV Envelope Protein Gp120	Chain G	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth L], F [auth C]	N49P9.3 ANTIBODY FAB LIGHT CHAIN	-	-	-
B [auth H], E [auth B]	N49P9.3 ANTIBODY FAB HEAVY CHAIN	-	-	-
A [auth G], D [auth A]	clade A/E 93TH057 HIV-1 gp120 core	-	viral process membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virion component viral membrane viral envelope virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], D [auth A]	IPR000777	Human immunodeficiency virus 1, envelope glycoprotein Gp120	Domain
A [auth G], D [auth A]	IPR036377	Gp120 core superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.