Strand-transfer complex of TnsB from ShCAST
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth B] | Mu-transpos_C | e7svwB2 | A: beta barrels | X: OB-fold | H: mu transposases-C (From Topology) | T: mu transposases-C | F: Mu-transpos_C | ECOD (1.6) |
| H [auth B] | F_UNCLASSIFIED | e7svwB4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
| H [auth B] | HTH_IclR | e7svwB3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_IclR | ECOD (1.6) |
| H [auth B] | rve | e7svwB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| J [auth D] | Mu-transpos_C | e7svwD2 | A: beta barrels | X: OB-fold | H: mu transposases-C (From Topology) | T: mu transposases-C | F: Mu-transpos_C | ECOD (1.6) |
| J [auth D] | F_UNCLASSIFIED | e7svwD4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
| J [auth D] | HTH_IclR | e7svwD3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_IclR | ECOD (1.6) |
| J [auth D] | rve | e7svwD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| G [auth A], H [auth B], I [auth C], J [auth D] | PF09299 | Mu transposase, C-terminal (Mu-transpos_C) | Mu transposase, C-terminal | Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology [1]. | Domain |
| G [auth A], H [auth B], I [auth C], J [auth D] | PF13384 | Homeodomain-like domain (HTH_23) | Homeodomain-like domain | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth 3], F [auth 6] | STC_LE_Rev2 | - | - | - |
| G [auth A], H [auth B], I [auth C], J [auth D] | TnsB | - | ||
| B [auth 2], E [auth 5] | STC_LE_Rev1 | - | - | - |
| A [auth 1], D [auth 4] | STC_LE_For | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR009004 | Transposase, Mu, C-terminal | Homologous Superfamily |
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR001584 | Integrase, catalytic core | Domain |
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
| G [auth A], H [auth B], I [auth C], J [auth D] | IPR015378 | Transposase-like, Mu, C-terminal | Domain |
