7STA | pdb_00007sta

X-ray Crystal Structure of Truncated Human Chemokine CCL19 (7-70)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Interleukin 8-like chemokines	8061443	3001955	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Interleukin 8-like chemokines	8061443	3001955	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Interleukin 8-like chemokines	8061443	3001955	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Interleukin 8-like chemokines	8061443	3001955	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SBP_bac_11	e7staD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_11	ECOD (v294.1)
C	SBP_bac_11	e7staC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_11	ECOD (v294.1)
B	SBP_bac_11	e7staB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_11	ECOD (v294.1)
A	Ribosomal_L27A, PF29471	e7staA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_L27A, PF29471	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00048	Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)	Small cytokines (intecrine/chemokine), interleukin-8 like	Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	C-C motif chemokine 19	CCR chemokine receptor binding protein binding binding signaling receptor binding CCR7 chemokine receptor binding cytokine receptor binding G protein-coupled receptor binding chemokine receptor binding CCR10 chemokine receptor binding molecular function activator activity signaling receptor activator activity chemokine activity molecular function regulator activity cytokine activity CCR chemokine receptor binding protein binding binding signaling receptor binding CCR7 chemokine receptor binding cytokine receptor binding G protein-coupled receptor binding chemokine receptor binding CCR10 chemokine receptor binding molecular function activator activity signaling receptor activator activity chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity	developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development mononuclear cell differentiation myeloid cell differentiation cell differentiation anatomical structure development dendritic cell differentiation cellular process mature conventional dendritic cell differentiation leukocyte differentiation cellular response to stimulus developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development mononuclear cell differentiation myeloid cell differentiation cell differentiation anatomical structure development dendritic cell differentiation cellular process mature conventional dendritic cell differentiation leukocyte differentiation cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus cell surface receptor signaling pathway signaling CCL19-activated CCR7 signaling pathway biological regulation response to cytokine response to chemokine chemokine (C-C motif) ligand 19 signaling pathway cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway cell communication response to peptide response to chemical G protein-coupled receptor signaling pathway cellular response to cytokine stimulus signal transduction C-C chemokine receptor CCR7 signaling pathway chemotaxis positive regulation of locomotion regulation of response to external stimulus positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus regulation of locomotion locomotion cell chemotaxis dendritic cell chemotaxis leukocyte migration dendritic cell migration myeloid dendritic cell chemotaxis cellular response to chemical stimulus immune system process mononuclear cell migration myeloid leukocyte migration cell migration cell motility leukocyte chemotaxis inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis response to ketone response to prostaglandin response to lipid response to endogenous stimulus response to alcohol cellular response to prostaglandin stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to prostaglandin E stimulus cellular response to alcohol response to hormone cellular response to lipid response to prostaglandin E cellular response to ketone cellular response to hormone stimulus multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of interleukin-1 beta production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of interleukin-1 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process interleukin-1 beta production positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of JNK cascade regulation of intracellular signal transduction JNK cascade intracellular signaling cassette regulation of signaling positive regulation of MAPK cascade regulation of JNK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade regulation of cell communication positive regulation of signaling regulation of cellular component organization cell projection organization regulation of cell projection assembly regulation of cell projection organization regulation of cellular component biogenesis cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis cell projection assembly regulation of localization import into cell positive regulation of cellular component organization transport vesicle-mediated transport localization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of transport endocytosis receptor-mediated endocytosis eosinophil chemotaxis granulocyte migration eosinophil migration granulocyte chemotaxis phospholipase C/protein kinase C signal transduction positive regulation of phospholipase C/protein kinase C signal transduction regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of immune system process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation lymphocyte costimulation regulation of leukocyte cell-cell adhesion T cell costimulation regulation of lymphocyte activation regulation of cell motility positive regulation of cell motility positive regulation of cell population proliferation lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation leukocyte proliferation positive regulation of mononuclear cell proliferation T cell proliferation regulation of lymphocyte proliferation regulation of T cell proliferation regulation of mononuclear cell proliferation response to nitric oxide response to nitrogen compound small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Rac protein signal transduction regulation of Rac protein signal transduction positive regulation of Rac protein signal transduction positive regulation of small GTPase mediated signal transduction positive regulation of canonical NF-kappaB signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of ERK1 and ERK2 cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade immune response regulation of Cdc42 protein signal transduction regulation of Rho protein signal transduction Rho protein signal transduction Cdc42 protein signal transduction positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process carbohydrate derivative metabolic process regulation of primary metabolic process protein metabolic process regulation of glycoprotein biosynthetic process positive regulation of glycoprotein biosynthetic process carbohydrate derivative biosynthetic process regulation of protein metabolic process glycoprotein biosynthetic process primary metabolic process glycoprotein metabolic process regulation of glycoprotein metabolic process adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of alpha-beta T cell activation positive regulation of T cell differentiation regulation of cell development multicellular organism development positive regulation of immune response regulation of T-helper cell differentiation alpha-beta T cell activation positive regulation of CD4-positive, alpha-beta T cell differentiation T-helper cell differentiation positive regulation of cell development T-helper 1 type immune response regulation of T-helper 1 type immune response immune effector process regulation of T-helper 1 cell differentiation positive regulation of alpha-beta T cell differentiation regulation of developmental process CD4-positive, alpha-beta T cell differentiation positive regulation of T-helper cell differentiation regulation of T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation leukocyte activation involved in immune response positive regulation of immune effector process regulation of CD4-positive, alpha-beta T cell activation regulation of immune effector process regulation of leukocyte differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response positive regulation of T-helper 1 cell differentiation positive regulation of developmental process T cell differentiation regulation of adaptive immune response positive regulation of alpha-beta T cell activation regulation of immune response regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation positive regulation of CD4-positive, alpha-beta T cell activation regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development T cell differentiation involved in immune response adaptive immune response T-helper 1 cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production positive regulation of cell migration positive regulation of neutrophil chemotaxis regulation of leukocyte chemotaxis regulation of leukocyte migration positive regulation of leukocyte chemotaxis neutrophil migration positive regulation of granulocyte chemotaxis regulation of neutrophil chemotaxis regulation of neutrophil migration neutrophil chemotaxis regulation of granulocyte chemotaxis regulation of cell migration positive regulation of leukocyte migration positive regulation of neutrophil migration regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction anatomical structure maturation cell maturation developmental maturation regulation of leukocyte apoptotic process dendritic cell apoptotic process negative regulation of dendritic cell apoptotic process negative regulation of programmed cell death leukocyte apoptotic process regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process regulation of dendritic cell apoptotic process apoptotic process programmed cell death dendritic cell dendrite assembly positive regulation of dendritic cell dendrite assembly plasma membrane bounded cell projection assembly positive regulation of cell projection organization regulation of dendritic cell dendrite assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly humoral immune response biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont antimicrobial humoral response response to biotic stimulus antimicrobial humoral immune response mediated by antimicrobial peptide defense response to other organism response to stress response to external biotic stimulus calcium ion transmembrane import into cytosol monoatomic ion transmembrane transport calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport release of sequestered calcium ion into cytosol intercellular transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction immunological synapse formation cell-cell recognition cell recognition response to virus establishment of lymphocyte polarity establishment of T cell polarity establishment or maintenance of cell polarity establishment of cell polarity inflammatory response regulation of dendritic cell antigen processing and presentation positive regulation of dendritic cell antigen processing and presentation positive regulation of antigen processing and presentation antigen processing and presentation regulation of antigen processing and presentation dendritic cell antigen processing and presentation regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production cellular response to virus	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001811	Chemokine interleukin-8-like domain	Domain
A, B, C, D	IPR000827	CC chemokine, conserved site	Conserved Site
A, B, C, D	IPR036048	Chemokine interleukin-8-like superfamily	Homologous Superfamily
A, B, C, D	IPR039809	Chemokine beta/gamma/delta	Family
A, B, C, D	IPR034133	Chemokine CC, DCCL motif-cointaining domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q99731	allergic contact dermatitis allergic disease pneumonia Sjogren syndrome ductal breast carcinoma in situ Hypersensitivity pancreatic intraductal papillary-mucinous carcinoma pneumonitis sarcoidosis ulcerative colitis hypertensive disorder lung adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis sinusitis allergic contact dermatitis allergic disease pneumonia Sjogren syndrome ductal breast carcinoma in situ Hypersensitivity pancreatic intraductal papillary-mucinous carcinoma pneumonitis sarcoidosis ulcerative colitis hypertensive disorder lung adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis sinusitis cystic fibrosis gastric carcinoma interstitial cystitis non-small cell lung carcinoma rheumatoid arthritis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.