7SPU | pdb_00007spu

In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AB [auth y]	PF29847	e7spuy1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
BA [auth Z]	PF29847	e7spuZ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
CA [auth a]	PF29847	e7spua1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
DA [auth b]	PF29847	e7spub1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
EA [auth c]	PF29847	e7spuc1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
FA [auth d]	PF29847	e7spud1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
GA [auth e]	PF29847	e7spue1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
IA [auth g]	PF29847	e7spug1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
KA [auth i]	PF29847	e7spui1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
LA [auth j]	PF29847	e7spuj1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
MA [auth k]	PF29847	e7spuk1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
NA [auth l]	PF29847	e7spul1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
O [auth M]	PF29847	e7spuM1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
OA [auth m]	PF29847	e7spum1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
P [auth N]	PF29847	e7spuN1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
Q [auth O]	PF29847	e7spuO1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
QA [auth o]	PF29847	e7spuo1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
R [auth P]	PF29847	e7spuP1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
S [auth Q]	PF29847	e7spuQ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
SA [auth q]	PF29847	e7spuq1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
T [auth R]	PF29847	e7spuR1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
U [auth S]	PF29847	e7spuS1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
UA [auth s]	PF29847	e7spus1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
V [auth T]	PF29847	e7spuT1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
VA [auth t]	PF29847	e7sput1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
W [auth U]	PF29847	e7spuU1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
WA [auth u]	PF29847	e7spuu1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
X [auth V]	PF29847	e7spuV1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
Y [auth W]	PF29847	e7spuW1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)
Z [auth X]	PF29847	e7spuX1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: PF29847	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	Gene 7 protein	cation binding ion binding binding metal ion binding small molecule binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	Gene 3 protein	-	-	-
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	Gene 5 protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR020362	Tail accessory factor GP4	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR032427	Phage P22-like portal protein	Family
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	IPR024659	Major capsid protein Gp5	Family