7SPK | pdb_00007spk

Models for C16 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth EF11]		e7spkEF111	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
BA [auth EF12]		e7spkEF121	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
CA [auth EF13]		e7spkEF131	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
DA [auth EF14]		e7spkEF141	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
EA [auth EF15]		e7spkEF151	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
FA [auth EF16]		e7spkEF161	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
Q [auth EF1]		e7spkEF11	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
R [auth EF2]		e7spkEF21	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
S [auth EF3]		e7spkEF31	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
T [auth EF4]		e7spkEF41	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
U [auth EF5]		e7spkEF51	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
V [auth EF6]		e7spkEF61	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
W [auth EF7]		e7spkEF71	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
X [auth EF8]		e7spkEF81	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
Y [auth EF9]		e7spkEF91	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)
Z [auth EF10]		e7spkEF101	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Sybindin	F:	ECOD (20:10:01)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	IPR014118	Type IV conjugative transfer system protein TraV	Family
AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], FA [auth EF16], Q [auth EF1], R [auth EF2], S [auth EF3], T [auth EF4], U [auth EF5], V [auth EF6], W [auth EF7], X [auth EF8], Y [auth EF9], Z [auth EF10]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	outer-membrane core complex (inner ring) encoded by multi-drug resistance F plasmids, models for C13 reconstruction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.