7SPK | pdb_00007spk

Models for C16 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth EF10]	F_UNCLASSIFIED	e7spkEF101	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
Y [auth EF9]	F_UNCLASSIFIED	e7spkEF91	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
X [auth EF8]	F_UNCLASSIFIED	e7spkEF81	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
W [auth EF7]	F_UNCLASSIFIED	e7spkEF71	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
V [auth EF6]	F_UNCLASSIFIED	e7spkEF61	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
U [auth EF5]	F_UNCLASSIFIED	e7spkEF51	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
T [auth EF4]	F_UNCLASSIFIED	e7spkEF41	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
S [auth EF3]	F_UNCLASSIFIED	e7spkEF31	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
R [auth EF2]	F_UNCLASSIFIED	e7spkEF21	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
Q [auth EF1]	F_UNCLASSIFIED	e7spkEF11	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
FA [auth EF16]	F_UNCLASSIFIED	e7spkEF161	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
EA [auth EF15]	F_UNCLASSIFIED	e7spkEF151	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
DA [auth EF14]	F_UNCLASSIFIED	e7spkEF141	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
CA [auth EF13]	F_UNCLASSIFIED	e7spkEF131	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
BA [auth EF12]	F_UNCLASSIFIED	e7spkEF121	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)
AA [auth EF11]	F_UNCLASSIFIED	e7spkEF111	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], FA [auth EF16], Q [auth EF1], R [auth EF2], S [auth EF3], T [auth EF4], U [auth EF5], V [auth EF6], W [auth EF7], X [auth EF8], Y [auth EF9], Z [auth EF10]	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	PF09676	Type IV conjugative transfer system lipoprotein (TraV) (TraV)	Type IV conjugative transfer system lipoprotein (TraV)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], AA [auth EF11], BA [auth EF12], CA [auth EF13], DA [auth EF14], EA [auth EF15], FA [auth EF16], Q [auth EF1], R [auth EF2], S [auth EF3], T [auth EF4], U [auth EF5], V [auth EF6], W [auth EF7], X [auth EF8], Y [auth EF9], Z [auth EF10]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	IPR014118	Type IV conjugative transfer system protein TraV	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	outer-membrane core complex (inner ring) encoded by multi-drug resistance F plasmids, models for C13 reconstruction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.