7SPJ | pdb_00007spj

Models for C17 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth EF9]	Sybindin	e7spjEF91	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
Y [auth EF8]	Sybindin	e7spjEF81	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
X [auth EF7]	Sybindin	e7spjEF71	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
W [auth EF6]	Sybindin	e7spjEF61	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
V [auth EF5]	Sybindin	e7spjEF51	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
U [auth EF4]	Sybindin	e7spjEF41	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
T [auth EF3]	Sybindin	e7spjEF31	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
S [auth EF2]	Sybindin	e7spjEF21	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
R [auth EF1]	Sybindin	e7spjEF11	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
HA [auth EF17]	Sybindin	e7spjEF171	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
GA [auth EF16]	Sybindin	e7spjEF161	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
FA [auth EF15]	Sybindin	e7spjEF151	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
EA [auth EF14]	Sybindin	e7spjEF141	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
DA [auth EF13]	Sybindin	e7spjEF131	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
CA [auth EF12]	Sybindin	e7spjEF121	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
BA [auth EF11]	Sybindin	e7spjEF111	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)
AA [auth EF10]	Sybindin	e7spjEF101	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth EF10], BA [auth EF11], CA [auth EF12], DA [auth EF13], EA [auth EF14], AA [auth EF10], BA [auth EF11], CA [auth EF12], DA [auth EF13], EA [auth EF14], FA [auth EF15], GA [auth EF16], HA [auth EF17], R [auth EF1], S [auth EF2], T [auth EF3], U [auth EF4], V [auth EF5], W [auth EF6], X [auth EF7], Y [auth EF8], Z [auth EF9]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17]	IPR014118	Type IV conjugative transfer system protein TraV	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17]	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5] A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	outer-membrane core complex (inner ring) encoded by multi-drug resistance F plasmids, models for C13 reconstruction

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.