7SPI | pdb_00007spi

Models for C13 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth F13]	AAA_lid_RFC1	e7spiF131	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
YB [auth F12]	AAA_lid_RFC1	e7spiF121	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
XB [auth F11]	AAA_lid_RFC1	e7spiF111	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
WB [auth F10]	AAA_lid_RFC1	e7spiF101	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
VB [auth F9]	AAA_lid_RFC1	e7spiF91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
UB [auth F8]	AAA_lid_RFC1	e7spiF81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
TB [auth F7]	AAA_lid_RFC1	e7spiF71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
SB [auth F6]	AAA_lid_RFC1	e7spiF61	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
RB [auth F5]	AAA_lid_RFC1	e7spiF51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
QB [auth F4]	AAA_lid_RFC1	e7spiF41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
PB [auth F3]	AAA_lid_RFC1	e7spiF31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
OB [auth F2]	AAA_lid_RFC1	e7spiF21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
NB [auth F1]	AAA_lid_RFC1	e7spiF11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
MB [auth E13]	AAA_lid_RFC1	e7spiE131	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
LB [auth E12]	AAA_lid_RFC1	e7spiE121	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
KB [auth E11]	AAA_lid_RFC1	e7spiE111	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
JB [auth E10]	AAA_lid_RFC1	e7spiE101	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
IB [auth E9]	AAA_lid_RFC1	e7spiE91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
HB [auth E8]	AAA_lid_RFC1	e7spiE81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
GB [auth E7]	AAA_lid_RFC1	e7spiE71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
FB [auth E6]	AAA_lid_RFC1	e7spiE61	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
EB [auth E5]	AAA_lid_RFC1	e7spiE51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
DB [auth E4]	AAA_lid_RFC1	e7spiE41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
CB [auth E3]	AAA_lid_RFC1	e7spiE31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
BB [auth E2]	AAA_lid_RFC1	e7spiE21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
AB [auth E1]	AAA_lid_RFC1	e7spiE11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth E1], BB [auth E2], CB [auth E3], DB [auth E4], EB [auth E5], AB [auth E1], BB [auth E2], CB [auth E3], DB [auth E4], EB [auth E5], FB [auth E6], GB [auth E7], HB [auth E8], IB [auth E9], JB [auth E10], KB [auth E11], LB [auth E12], MB [auth E13], NB [auth F1], OB [auth F2], PB [auth F3], QB [auth F4], RB [auth F5], SB [auth F6], TB [auth F7], UB [auth F8], VB [auth F9], WB [auth F10], XB [auth F11], YB [auth F12], ZB [auth F13]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], FA [auth C6], GA [auth C7], HA [auth C8], IA [auth C9], JA [auth C10], KA [auth C11], LA [auth C12], MA [auth C13], NA [auth D1], OA [auth D2], PA [auth D3], QA [auth D4], RA [auth D5], SA [auth D6], TA [auth D7], UA [auth D8], VA [auth D9], WA [auth D10], XA [auth D11], YA [auth D12], ZA [auth D13]	IPR055397	TraK, C-terminal domain	Domain
AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], FA [auth C6], GA [auth C7], HA [auth C8], IA [auth C9], JA [auth C10], KA [auth C11], LA [auth C12], MA [auth C13], NA [auth D1], OA [auth D2], PA [auth D3], QA [auth D4], RA [auth D5], SA [auth D6], TA [auth D7], UA [auth D8], VA [auth D9], WA [auth D10], XA [auth D11], YA [auth D12], ZA [auth D13]	IPR014126	Type-F conjugative transfer system secretin TraK	Family
AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], AA [auth C1], BA [auth C2], CA [auth C3], DA [auth C4], EA [auth C5], FA [auth C6], GA [auth C7], HA [auth C8], IA [auth C9], JA [auth C10], KA [auth C11], LA [auth C12], MA [auth C13], NA [auth D1], OA [auth D2], PA [auth D3], QA [auth D4], RA [auth D5], SA [auth D6], TA [auth D7], UA [auth D8], VA [auth D9], WA [auth D10], XA [auth D11], YA [auth D12], ZA [auth D13]	IPR010563	TraK, N-terminal	Domain
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth A5], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth A5], F [auth A6], G [auth A7], H [auth A8], I [auth A9], J [auth A10], K [auth A11], L [auth A12], M [auth A13], N [auth B1], O [auth B2], P [auth B3], Q [auth B4], R [auth B5], S [auth B6], T [auth B7], U [auth B8], V [auth B9], W [auth B10], X [auth B11], Y [auth B12], Z [auth B13]	IPR014118	Type IV conjugative transfer system protein TraV	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth A1], AA [auth C1], B [auth A2], BA [auth C2], C [auth A3] A [auth A1], AA [auth C1], B [auth A2], BA [auth C2], C [auth A3], CA [auth C3], D [auth A4], DA [auth C4], E [auth A5], EA [auth C5], F [auth A6], FA [auth C6], G [auth A7], GA [auth C7], H [auth A8], HA [auth C8], I [auth A9], IA [auth C9], J [auth A10], JA [auth C10], K [auth A11], KA [auth C11], L [auth A12], LA [auth C12], M [auth A13], MA [auth C13], N [auth B1], NA [auth D1], O [auth B2], OA [auth D2], P [auth B3], PA [auth D3], Q [auth B4], QA [auth D4], R [auth B5], RA [auth D5], S [auth B6], SA [auth D6], T [auth B7], TA [auth D7], U [auth B8], UA [auth D8], V [auth B9], VA [auth D9], W [auth B10], WA [auth D10], X [auth B11], XA [auth D11], Y [auth B12], YA [auth D12], Z [auth B13], ZA [auth D13]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	outer-membrane core complex (inner ring) encoded by multi-drug resistance F plasmids, models for C13 reconstruction

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.