7SGZ
Structure of the yeast Rad24-RFC loader bound to DNA and the closed 9-1-1 clamp
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104167 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Post-AAA+ oligomerization domain-like | 8039761 | 3000691 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039762 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Post-AAA+ oligomerization domain-like | 8039763 | 3000691 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039767 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104168 | 3002834 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Post-AAA+ oligomerization domain-like | 8039769 | 3000691 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104169 | 3002834 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039771 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039774 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Post-AAA+ oligomerization domain-like | 8039775 | 3000691 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104170 | 3002834 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e7sgzA1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e7sgzA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF03215 | e7sgzA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03215 | ECOD (1.6) |
B | PF08542 | e7sgzB2 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
B | F_UNCLASSIFIED | e7sgzB3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00004 | e7sgzB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF08542 | e7sgzC3 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
C | F_UNCLASSIFIED | e7sgzC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00004 | e7sgzC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF08542 | e7sgzD3 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
D | PF21960 | e7sgzD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
D | PF00004 | e7sgzD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF22534 | e7sgzE3 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF22534 | ECOD (1.6) |
E | PF21960 | e7sgzE2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
E | PF13177 | e7sgzE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13177 | ECOD (1.6) |
F | PF04005 | e7sgzF2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF04005 | ECOD (1.6) |
G | PF02144 | e7sgzG2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02144 | ECOD (1.6) |
H | PF04139 | e7sgzH1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF04139 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03215 | Rad17 P-loop domain (Rad17) | Rad17 P-loop domain | - | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF13177 | DNA polymerase III, delta subunit (DNA_pol3_delta2) | DNA polymerase III, delta subunit | DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ... | Domain | |
PF02144 | Repair protein Rad1/Rec1/Rad17 (Rad1) | Repair protein Rad1/Rec1/Rad17 | - | Family | |