7SFX

10A1 Fab in complex with CD99 peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	PF07654	e7sfxC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
A [auth C]	PF07686	e7sfxC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
D [auth A]	PF07654	e7sfxA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
D [auth A]	PF07686	e7sfxA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
G	PF07654	e7sfxG2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
G	PF07686	e7sfxG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
I [auth J]	PF07654	e7sfxJ2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
I [auth J]	PF07686	e7sfxJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
B [auth D]	PF07654	e7sfxD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
B [auth D]	PF07686	e7sfxD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
E [auth B]	PF07654	e7sfxB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
E [auth B]	PF07686	e7sfxB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
H	PF07654	e7sfxH2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
H	PF07686	e7sfxH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
J [auth K]	PF07654	e7sfxK2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
J [auth K]	PF07686	e7sfxK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth C], D [auth A], G, I [auth J]	Heavy Chain	IGHV6	-	cd99 antigen peptide	SAbDab (2024-05-10)
B [auth D], E [auth B], H, J [auth K]	Light Chain	IGLV3	Lambda	cd99 antigen peptide	SAbDab (2024-05-10)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth F], F [auth E]	PF12301	CD99 antigen like protein 2 (CD99L2)	CD99 antigen like protein 2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], D [auth A], G, I [auth J]	10A1 Fab heavy chain	-	-	-
B [auth D], E [auth B], H, J [auth K]	10A1 Fab light chain	-	-	-
C [auth F], F [auth E]	CD99 antigen peptide	-	cell adhesion cell-cell adhesion homotypic cell-cell adhesion cellular process leukocyte migration T cell extravasation immune system process mononuclear cell migration cellular extravasation lymphocyte migration cell migration cell motility T cell migration positive regulation of locomotion cell adhesion cell-cell adhesion homotypic cell-cell adhesion cellular process leukocyte migration T cell extravasation immune system process mononuclear cell migration cellular extravasation lymphocyte migration cell migration cell motility T cell migration positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of biological process regulation of neutrophil extravasation positive regulation of cell migration positive regulation of cell motility myeloid leukocyte migration regulation of cell migration regulation of immune system process positive regulation of immune system process locomotion positive regulation of cellular process regulation of biological process neutrophil extravasation regulation of leukocyte migration biological regulation positive regulation of leukocyte migration positive regulation of neutrophil migration neutrophil migration granulocyte migration positive regulation of neutrophil extravasation regulation of locomotion regulation of neutrophil migration positive regulation of cellular extravasation regulation of cellular extravasation	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction cell periphery plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F], F [auth E]	IPR022078	CD99 antigen-like protein 2	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth F], F [auth E]	Pharos: P14209	mesenchymal chondrosarcoma pituitary cancer rheumatoid arthritis astrocytic tumor Down syndrome intellectual disability lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor sarcoma atypical teratoid rhabdoid tumor Duchenne muscular dystrophy limb-girdle muscular dystrophy malignant ependymoma mesenchymal chondrosarcoma pituitary cancer rheumatoid arthritis astrocytic tumor Down syndrome intellectual disability lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor sarcoma atypical teratoid rhabdoid tumor Duchenne muscular dystrophy limb-girdle muscular dystrophy malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma pilocytic astrocytoma psoriasis schizophrenia breast cancer glioblastoma lung cancer malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.