Annotations: 7SFS

In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth L]	AAA_lid_RFC1	e7sfsL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
W [auth X]	AAA_lid_RFC1	e7sfsX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
V [auth W]	AAA_lid_RFC1	e7sfsW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
U [auth V]	AAA_lid_RFC1	e7sfsV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
T [auth U]	AAA_lid_RFC1	e7sfsU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
S [auth T]	AAA_lid_RFC1	e7sfsT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
R [auth S]	AAA_lid_RFC1	e7sfsS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
Q [auth R]	AAA_lid_RFC1	e7sfsR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
P [auth Q]	AAA_lid_RFC1	e7sfsQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
O [auth P]	AAA_lid_RFC1	e7sfsP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
N [auth O]	AAA_lid_RFC1	e7sfsO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
M [auth N]		e7sfsN01	A: alpha arrays	X: Histone-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F:	ECOD (v295)
L [auth K]	AAA_lid_RFC1	e7sfsK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
K [auth J]	AAA_lid_RFC1	e7sfsJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
J [auth I]	AAA_lid_RFC1	e7sfsI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
I [auth H]	AAA_lid_RFC1	e7sfsH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
H [auth G]	AAA_lid_RFC1	e7sfsG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
G [auth F]	AAA_lid_RFC1	e7sfsF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
F [auth E]	AAA_lid_RFC1	e7sfsE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
E [auth D]	AAA_lid_RFC1	e7sfsD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
D [auth C]	AAA_lid_RFC1	e7sfsC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
C [auth B]	AAA_lid_RFC1	e7sfsB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
B [auth A]	AAA_lid_RFC1	e7sfsA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
A [auth M]		e7sfsM01	A: alpha arrays	X: Histone-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F:	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth L]	PF11650	P22 tail accessory factor (P22_Tail-4)	P22 tail accessory factor	-	Family
A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth L]	Gene 7 protein	cation binding ion binding binding metal ion binding small molecule binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K]	Gene 3 protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth L]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth L]	IPR020362	Tail accessory factor GP4	Family
A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], A [auth M], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K]	IPR032427	Phage P22-like portal protein	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7SFS | pdb_00007sfs

In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage