7S88 | pdb_00007s88

Open apo-state cryo-EM structure of human TRPV6 in glyco-diosgenin detergent

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ankyrin repeat	8089699	3000154	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Voltage-gated potassium channels	8089816	3000023	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ankyrin repeat	8089699	3000154	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Voltage-gated potassium channels	8089816	3000023	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ankyrin repeat	8089699	3000154	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Voltage-gated potassium channels	8089816	3000023	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Voltage-gated potassium channels	8089816	3000023	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ankyrin repeat	8089699	3000154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cation_ATPase	e7s88A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cation_ATPase	ECOD (v294.1)
B	DUF1870	e7s88B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF1870	ECOD (v294.1)
C	DUF1870	e7s88C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF1870	ECOD (v294.1)
D	DUF1870	e7s88D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF1870	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
B	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
C	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
D	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat
A, B, C, D	PF00023	Ankyrin repeat (Ank)	Ankyrin repeat	-	Repeat
A, B, C, D	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Transient receptor potential cation channel subfamily V member 6	protein binding binding calmodulin binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity protein binding binding calmodulin binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity cation binding ion binding metal ion binding small molecule binding identical protein binding	import into cell calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport import across plasma membrane establishment of localization inorganic cation import across plasma membrane calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization calcium ion import across plasma membrane inorganic ion import across plasma membrane monoatomic ion transport import into cell calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport import across plasma membrane establishment of localization inorganic cation import across plasma membrane calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization calcium ion import across plasma membrane inorganic ion import across plasma membrane monoatomic ion transport cellular process calcium ion import calcium ion import into cytosol monoatomic cation transport calcium ion transmembrane transport regulation of localization regulated exocytosis regulation of biological process regulation of cellular process regulation of calcium ion-dependent exocytosis secretion regulation of transport biological regulation export from cell regulation of vesicle-mediated transport vesicle-mediated transport regulation of secretion regulation of regulated secretory pathway secretion by cell regulation of secretion by cell exocytosis regulation of exocytosis calcium-ion regulated exocytosis inorganic ion homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis calcium ion homeostasis monoatomic cation homeostasis response to stimulus response to metal ion response to chemical response to calcium ion multicellular organismal process system process signaling regulation of hormone levels cell-cell signaling parathyroid hormone secretion hormone secretion cell communication endocrine hormone secretion endocrine process signal release hormone transport regulation of biological quality	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex transmembrane transporter complex membrane protein complex cation channel complex transporter complex calcium channel complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002110	Ankyrin repeat	Repeat
A, B, C, D	IPR005821	Ion transport domain	Domain
A, B, C, D	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR024862	Transient receptor potential cation channel subfamily V	Family
A, B, C, D	IPR008345	Transient receptor potential cation channel subfamily V member 6	Family
A, B, C, D	IPR008344	Transient receptor potential cation channel subfamily V member 5/6	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9H1D0	polycystic ovary syndrome alcoholic pancreatitis glioblastoma ovarian cancer atypical teratoid rhabdoid tumor large cell medulloblastoma pancreatic intraductal papillary-mucinous neoplasm psoriasis cutaneous lupus erythematosus malignant glioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sclerocystic Ovaries

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Transient receptor potential channels

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Transient Receptor Potential (TRP)	TRPV6 transient receptor potential calcium channel, apo-state, in glyco-diosgenin detergent

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.