7S6D | pdb_00007s6d

CryoEM structure of modular PKS holo-Lsd14 bound to antibody fragment 1B2, composite structure

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth F]	C1-set_4	e7s6dF2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_4	ECOD (1.6)
G [auth F]	V-set	e7s6dF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
E [auth G]	C1-set_4	e7s6dG2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_4	ECOD (1.6)
E [auth G]	V-set	e7s6dG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
F [auth D]	C1-set_1	e7s6dD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
F [auth D]	V-set_12	e7s6dD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
D [auth E]	C1-set_1	e7s6dE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
D [auth E]	V-set_12	e7s6dE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
A [auth C]	KR_1_SDR_x	e7s6dC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: KR_1_SDR_x	ECOD (1.6)
A [auth C]	adh_short_C2_1	e7s6dC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
D [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth B]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
C [auth B]	3.30.70.3290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
C [auth B]	3.40.366.10	Alpha Beta	3-Layer(aba) Sandwich	Malonyl-Coenzyme A Acyl Carrier Protein	domain 2	CATH (utative)
B [auth A]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
B [auth A]	3.30.70.3290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
B [auth A]	3.40.366.10	Alpha Beta	3-Layer(aba) Sandwich	Malonyl-Coenzyme A Acyl Carrier Protein	domain 2	CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
E [auth G], G [auth F]	Light Chain	IGKV2	Kappa	6-deoxyerythronolide-b synthase erya2, modules 3 and 4,lsd14 polyketide synthase fusion	SAbDab (2026-02-06)
D [auth E], F [auth D]	Heavy Chain	IGHV3	-	6-deoxyerythronolide-b synthase erya2, modules 3 and 4,lsd14 polyketide synthase fusion	SAbDab (2026-02-06)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth G], G [auth F]	Fab 1B2 light chain	-	-	-
D [auth E], F [auth D]	Fab 1B2 heavy chain	-	-	-
A [auth C], B [auth A], C [auth B]	6-deoxyerythronolide-B synthase EryA2, modules 3 and 4, Lsd14 Polyketide synthase fusion	vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity fatty acid synthase activity vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity fatty acid synthase activity oxidoreductase activity erythronolide synthase activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process macrolide biosynthetic process polyketide metabolic process macrolide metabolic process secondary metabolic process antibiotic biosynthetic process antibiotic metabolic process polyketide biosynthetic process secondary metabolite biosynthetic process lactone metabolic process lactone biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth B]	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR015083	Polyketide synthase NorB/C/GfsB-E-like, docking domain	Domain
A [auth C], B [auth A], C [auth B]	IPR006162	Phosphopantetheine attachment site	PTM
A [auth C], B [auth A], C [auth B]	IPR057326	Ketoreductase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A [auth C], B [auth A], C [auth B]	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A [auth C], B [auth A], C [auth B]	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR036736	ACP-like superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR014043	Acyl transferase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A [auth C], B [auth A], C [auth B]	IPR041618	Polyketide synthase dimerisation element domain	Domain
A [auth C], B [auth A], C [auth B]	IPR032821	Polyketide synthase, C-terminal extension	Domain
A [auth C], B [auth A], C [auth B]	IPR009081	Phosphopantetheine binding ACP domain	Domain
A [auth C], B [auth A], C [auth B]	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A [auth C], B [auth A], C [auth B]	IPR036299	Polyketide synthase, docking domain superfmaily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR016039	Thiolase-like	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A [auth C], B [auth A], C [auth B]	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR015083	Polyketide synthase NorB/C/GfsB-E-like, docking domain	Domain
A [auth C], B [auth A], C [auth B]	IPR006162	Phosphopantetheine attachment site	PTM
A [auth C], B [auth A], C [auth B]	IPR013154	Alcohol dehydrogenase-like, N-terminal	Domain
A [auth C], B [auth A], C [auth B]	IPR057326	Ketoreductase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR036347	Erythronolide synthase, docking domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A [auth C], B [auth A], C [auth B]	IPR049552	Polyketide synthase, dehydratase domain, N-terminal	Domain
A [auth C], B [auth A], C [auth B]	IPR049900	Polyketide synthase, dehydratase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR049551	Polyketide synthase, dehydratase domain, C-terminal	Domain
A [auth C], B [auth A], C [auth B]	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A [auth C], B [auth A], C [auth B]	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR020807	Polyketide/metazoan fatty acid synthase-like, dehydratase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR036736	ACP-like superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR014043	Acyl transferase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR020843	Enoylreductase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A [auth C], B [auth A], C [auth B]	IPR032821	Polyketide synthase, C-terminal extension	Domain
A [auth C], B [auth A], C [auth B]	IPR011032	GroES-like superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR009081	Phosphopantetheine binding ACP domain	Domain
A [auth C], B [auth A], C [auth B]	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A [auth C], B [auth A], C [auth B]	IPR015357	EryA2-like, docking domain	Domain
A [auth C], B [auth A], C [auth B]	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A [auth C], B [auth A], C [auth B]	IPR016039	Thiolase-like	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A [auth C], B [auth A], C [auth B]	IPR042104	Polyketide synthase, dehydratase domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B]	IPR055123	Polyketide synthase extender module SpnB-like, Rossmann fold domain	Domain