7S6B | pdb_00007s6b

Crystal structure of modular polyketide synthase apo-Lsd14 from the Lasalocid biosynthesis pathway, trapped in the transacylation step

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	PP-binding	e7s6bE1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
D	EUF08195	e7s6bD3	A: alpha duplicates or obligate multimers	X: Dimerization element domain in modular polyketide synthases (From Topology)	H: Dimerization element domain in modular polyketide synthases (From Topology)	T: Dimerization element domain in modular polyketide synthases	F: EUF08195	ECOD (1.6)
D	KR_1_SDR_x	e7s6bD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: KR_1_SDR_x	ECOD (1.6)
D	adh_short_C2_1	e7s6bD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2_1	ECOD (1.6)
C	EUF08195	e7s6bC3	A: alpha duplicates or obligate multimers	X: Dimerization element domain in modular polyketide synthases (From Topology)	H: Dimerization element domain in modular polyketide synthases (From Topology)	T: Dimerization element domain in modular polyketide synthases	F: EUF08195	ECOD (1.6)
C	KR_1_SDR_x	e7s6bC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: KR_1_SDR_x	ECOD (1.6)
C	adh_short_C2_1	e7s6bC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2_1	ECOD (1.6)
B	Docking	e7s6bB2	A: alpha duplicates or obligate multimers	X: Docking domains in modular polyketide synthases	H: Class 1 N-terminal docking domain (From Topology)	T: Class 1 N-terminal docking domain	F: Docking	ECOD (1.6)
B	Acyl_transf_1_2nd	e7s6bB4	A: a+b two layers	X: Alpha-beta plaits	H: Probable ACP-binding domain of malonyl-CoA ACP transacylase (From Topology)	T: Probable ACP-binding domain of malonyl-CoA ACP transacylase	F: Acyl_transf_1_2nd	ECOD (1.6)
B	PksD_2	e7s6bB3	A: a+b two layers	X: KS-MAT linker domain in fatty acid synthase (From Topology)	H: KS-MAT linker domain in fatty acid synthase (From Topology)	T: KS-MAT linker domain in fatty acid synthase	F: PksD_2	ECOD (1.6)
B	Acyl_transf_1_1st	e7s6bB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: FabD/lysophospholipase-like	F: Acyl_transf_1_1st	ECOD (1.6)
B	ketoacyl-synt	e7s6bB5	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ketoacyl-synt	ECOD (1.6)
B	Ketoacyl-synt_C	e7s6bB6	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Ketoacyl-synt_C	ECOD (1.6)
A	F_UNCLASSIFIED	e7s6bA5	A: alpha duplicates or obligate multimers	X: Docking domains in modular polyketide synthases	H: Class 1 N-terminal docking domain (From Topology)	T: Class 1 N-terminal docking domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	Acyl_transf_1_2nd	e7s6bA1	A: a+b two layers	X: Alpha-beta plaits	H: Probable ACP-binding domain of malonyl-CoA ACP transacylase (From Topology)	T: Probable ACP-binding domain of malonyl-CoA ACP transacylase	F: Acyl_transf_1_2nd	ECOD (1.6)
A	PksD_2	e7s6bA2	A: a+b two layers	X: KS-MAT linker domain in fatty acid synthase (From Topology)	H: KS-MAT linker domain in fatty acid synthase (From Topology)	T: KS-MAT linker domain in fatty acid synthase	F: PksD_2	ECOD (1.6)
A	PksD,Acyl_transf_1_1st	e7s6bA4	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: FabD/lysophospholipase-like	F: PksD,Acyl_transf_1_1st	ECOD (1.6)
A	ketoacyl-synt	e7s6bA3	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ketoacyl-synt	ECOD (1.6)
A	Ketoacyl-synt_C	e7s6bA6	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Ketoacyl-synt_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (utative)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	Polyketide synthase	vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity fatty acid synthase activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process macrolide biosynthetic process polyketide metabolic process macrolide metabolic process secondary metabolic process antibiotic biosynthetic process antibiotic metabolic process polyketide biosynthetic process secondary metabolite biosynthetic process lactone metabolic process lactone biosynthetic process	-
C, D	Polyketide synthase	vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity fatty acid synthase activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process macrolide biosynthetic process polyketide metabolic process macrolide metabolic process secondary metabolic process antibiotic biosynthetic process antibiotic metabolic process polyketide biosynthetic process secondary metabolite biosynthetic process lactone metabolic process lactone biosynthetic process	-
A, B	Polyketide synthase	vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity fatty acid synthase activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process macrolide biosynthetic process polyketide metabolic process macrolide metabolic process secondary metabolic process antibiotic biosynthetic process antibiotic metabolic process polyketide biosynthetic process secondary metabolite biosynthetic process lactone metabolic process lactone biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
E	IPR015083	Polyketide synthase NorB/C/GfsB-E-like, docking domain	Domain
E	IPR006162	Phosphopantetheine attachment site	PTM
E	IPR057326	Ketoreductase domain	Domain
E	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
E	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
E	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
E	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
E	IPR036736	ACP-like superfamily	Homologous Superfamily
E	IPR014043	Acyl transferase domain	Domain
E	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
E	IPR041618	Polyketide synthase dimerisation element domain	Domain
E	IPR032821	Polyketide synthase, C-terminal extension	Domain
E	IPR009081	Phosphopantetheine binding ACP domain	Domain
E	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
E	IPR036299	Polyketide synthase, docking domain superfmaily	Homologous Superfamily
E	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
E	IPR016039	Thiolase-like	Homologous Superfamily
E	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
E	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
E	IPR018201	Beta-ketoacyl synthase, active site	Active Site
C, D	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
C, D	IPR015083	Polyketide synthase NorB/C/GfsB-E-like, docking domain	Domain
C, D	IPR006162	Phosphopantetheine attachment site	PTM
C, D	IPR057326	Ketoreductase domain	Domain
C, D	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
C, D	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
C, D	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
C, D	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
C, D	IPR036736	ACP-like superfamily	Homologous Superfamily
C, D	IPR014043	Acyl transferase domain	Domain
C, D	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
C, D	IPR041618	Polyketide synthase dimerisation element domain	Domain
C, D	IPR032821	Polyketide synthase, C-terminal extension	Domain
C, D	IPR009081	Phosphopantetheine binding ACP domain	Domain
C, D	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
C, D	IPR036299	Polyketide synthase, docking domain superfmaily	Homologous Superfamily
C, D	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
C, D	IPR016039	Thiolase-like	Homologous Superfamily
C, D	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
C, D	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A, B	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A, B	IPR015083	Polyketide synthase NorB/C/GfsB-E-like, docking domain	Domain
A, B	IPR006162	Phosphopantetheine attachment site	PTM
A, B	IPR057326	Ketoreductase domain	Domain
A, B	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A, B	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A, B	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A, B	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A, B	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B	IPR014043	Acyl transferase domain	Domain
A, B	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A, B	IPR041618	Polyketide synthase dimerisation element domain	Domain
A, B	IPR032821	Polyketide synthase, C-terminal extension	Domain
A, B	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A, B	IPR036299	Polyketide synthase, docking domain superfmaily	Homologous Superfamily
A, B	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A, B	IPR016039	Thiolase-like	Homologous Superfamily
A, B	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A, B	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B	IPR018201	Beta-ketoacyl synthase, active site	Active Site