7RYE | pdb_00007rye

Cryo-EM structure of the needle filament-tip complex of the Salmonella type III secretion injectisome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
V	SCOP2 Family	IpaD-like	8105567	4001436	SCOP2 (2022-06-29)
V	SCOP2 Superfamily	IpaD-like	8105568	3001578	SCOP2 (2022-06-29)
V	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	PUF	e7ryeX1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
V	PUF	e7ryeV1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
R	PUF	e7ryeR1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
O	PUF	e7ryeO1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
F	PUF	e7ryeF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
W	PUF	e7ryeW1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
U	PUF	e7ryeU1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
T	PUF	e7ryeT1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
S	PUF	e7ryeS1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
Q	PUF	e7ryeQ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
P	PUF	e7ryeP1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
N	PUF	e7ryeN1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
M	PUF	e7ryeM1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
L	PUF	e7ryeL1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
K	PUF	e7ryeK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
J	PUF	e7ryeJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
I	PUF	e7ryeI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
H	PUF	e7ryeH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
G	PUF	e7ryeG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
E	PUF	e7ryeE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
D	PUF	e7ryeD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
C	PUF	e7ryeC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
B	PUF	e7ryeB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)
A	PUF	e7ryeA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PUF	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	PF09392	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF (T3SS_needle_F)	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, O, R, V, X	Cell invasion protein SipD	-	-	cellular anatomical structure extracellular region
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	Protein PrgI	identical protein binding protein binding binding	establishment of protein localization transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization establishment of protein localization transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell surface cellular anatomical structure extracellular region protein-containing complex type III protein secretion system complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F, O, R, V, X	IPR009483	Type III secretion systems tip complex component IpaD/BipD/SipD	Family
F, O, R, V, X	IPR036708	BipD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR037203	Type III secretion, needle-protein-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR021123	Type III secretion, needle-protein-like	Family
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR011841	Type III secretion system, needle protein	Family