7RYE

Cryo-EM structure of the needle filament-tip complex of the Salmonella type III secretion injectisome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
V	SCOP2 Family	IpaD-like	8105567	4001436	SCOP2 (2022-06-29)
V	SCOP2 Superfamily	IpaD-like	8105568	3001578	SCOP2 (2022-06-29)
V	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	IpaD-like	8078125	3001578	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF09392	e7ryeA1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
B	PF09392	e7ryeB1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
C	PF09392	e7ryeC1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
D	PF09392	e7ryeD1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
E	PF09392	e7ryeE1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
G	PF09392	e7ryeG1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
H	PF09392	e7ryeH1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
I	PF09392	e7ryeI1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
J	PF09392	e7ryeJ1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
K	PF09392	e7ryeK1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
L	PF09392	e7ryeL1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
M	PF09392	e7ryeM1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
N	PF09392	e7ryeN1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
P	PF09392	e7ryeP1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
Q	PF09392	e7ryeQ1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
S	PF09392	e7ryeS1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
T	PF09392	e7ryeT1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
U	PF09392	e7ryeU1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
W	PF09392	e7ryeW1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
F	PF06511	e7ryeF1	A: alpha bundles	X: IpaD-like (From Topology)	H: IpaD-like (From Topology)	T: IpaD-like	F: PF06511	ECOD (1.6)
O	PF06511	e7ryeO1	A: alpha bundles	X: IpaD-like (From Topology)	H: IpaD-like (From Topology)	T: IpaD-like	F: PF06511	ECOD (1.6)
R	PF06511	e7ryeR1	A: alpha bundles	X: IpaD-like (From Topology)	H: IpaD-like (From Topology)	T: IpaD-like	F: PF06511	ECOD (1.6)
V	PF06511	e7ryeV1	A: alpha bundles	X: IpaD-like (From Topology)	H: IpaD-like (From Topology)	T: IpaD-like	F: PF06511	ECOD (1.6)
X	PF06511	e7ryeX1	A: alpha bundles	X: IpaD-like (From Topology)	H: IpaD-like (From Topology)	T: IpaD-like	F: PF06511	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	PF09392	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF (T3SS_needle_F)	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF	-	Family
F, O, R, V, X	PF06511	Type III secretion systems tip complex components (T3SS_TC)	Type III secretion systems tip complex components	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	Protein PrgI	identical protein binding protein binding binding	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport cellular macromolecule localization macromolecule localization cellular process	cell surface cellular anatomical entity extracellular region protein-containing complex type III protein secretion system complex
F, O, R, V, X	Cell invasion protein SipD	-	-	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR037203	Type III secretion, needle-protein-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR021123	Type III secretion, needle-protein-like	Family
A, B, C, D, E A, B, C, D, E, G, H, I, J, K, L, M, N, P, Q, S, T, U, W	IPR011841	Type III secretion system, needle protein	Family
F, O, R, V, X	IPR009483	Type III secretion systems tip complex component IpaD/BipD/SipD	Family
F, O, R, V, X	IPR036708	BipD-like superfamily	Homologous Superfamily