7RXC | pdb_00007rxc

CryoEM structure of KDELR with Legobody


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2 FamilyPhosphate binding protein-like 8105368 4000229 SCOP2 (2022-06-29)
D [auth B]SCOP2 FamilyImmunoglobulin-binding protein A modules 8105460 4000790 SCOP2 (2022-06-29)
D [auth B]SCOP2 SuperfamilyType 2 solute binding protein-like 8105369 3000083 SCOP2 (2022-06-29)
D [auth B]SCOP2 SuperfamilyBacterial immunoglobulin/albumin-binding domains 8105461 3001373 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]B,IgG_binding_Be7rxcB2 A: alpha arraysX: DnaD domain (From Topology)H: DnaD domain (From Topology)T: DnaD domainF: B,IgG_binding_BECOD (1.6)
D [auth B]SBP_bac_1_Ce7rxcB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_1_CECOD (1.6)
D [auth B]SBP_bac_1_N_1e7rxcB3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_1_N_1ECOD (1.6)
C [auth N]V-set_8e7rxcN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
B [auth L]C1-set_4e7rxcL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
B [auth L]V-sete7rxcL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
A [auth H]V-set_8e7rxcH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
A [auth H]C1-set_1e7rxcH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth B]3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
C [auth N]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth N]Heavy ChainIGHV1 -er lumen protein-retaining receptor 2SAbDab (2025-12-19)
B [auth L]Light ChainIGKV8 Kappamaltodextrin-binding protein,immunoglobulin g-bindingprotein a,immunoglobulin g-binding protein g SAbDab (2025-12-19)
A [auth H]Heavy ChainIGHV5 -maltodextrin-binding protein,immunoglobulin g-bindingprotein a,immunoglobulin g-binding protein g SAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF02216B domain (B)B domainThis family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. Domain
E [auth K]PF00810ER lumen protein retaining receptor (ER_lumen_recept)ER lumen protein retaining receptor- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth B]Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G -
E [auth K]ER lumen protein-retaining receptor 2
C [auth N]Nb_KR---
B [auth L]Fab_8D3_2 light chain---
A [auth H]Fab_8D3_2 heavy chain---