7RI8
The structure of BAM in MSP2N2 nanodiscs
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | POTRA domain-like | 8052275 | 3002100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | POTRA domain-like | 8052271 | 3002100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | POTRA domain-like | 8052274 | 3002100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | POTRA domain-like | 8052273 | 3002100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Porins | 8052233 | 3000224 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | POTRA domain-like | 8052272 | 3002100 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TPR-like | 8106140 | 3001345 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01103 | e7ri8A1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: PF01103 | ECOD (1.6) |
A | PF07244 | e7ri8A5 | A: a+b duplicates or obligate multimers | X: Polypeptide transport-associated (POTRA) domain (From Topology) | H: Polypeptide transport-associated (POTRA) domain (From Topology) | T: Polypeptide transport-associated (POTRA) domain | F: PF07244 | ECOD (1.6) |
B | PF13360 | e7ri8B1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF13360 | ECOD (1.6) |
D | PF13525 | e7ri8D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF13525 | ECOD (1.6) |
E | PF04355 | e7ri8E1 | A: a+b two layers | X: BLIP-like | H: beta-lactamase-inhibitor protein, BLIP (From Topology) | T: beta-lactamase-inhibitor protein, BLIP | F: PF04355 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07244 | Surface antigen variable number repeat (POTRA) | Surface antigen variable number repeat | This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members ... | Domain | |
PF01103 | Omp85 superfamily domain (Omp85) | Omp85 superfamily domain | The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ... | Domain | |
PF06804 | NlpB/DapX lipoprotein (Lipoprotein_18) | NlpB/DapX lipoprotein | - | Family | |
PF13525 | Outer membrane lipoprotein (YfiO) | Outer membrane lipoprotein | - | Repeat | |
PF04355 | SmpA / OmlA family (SmpA_OmlA) | SmpA / OmlA family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039910 | Surface antigen D15-like | Family | |
IPR034746 | POTRA domain | Domain | |
IPR000184 | Bacterial surface antigen (D15) | Domain | |
IPR010827 | POTRA domain, BamA/TamA-like | Domain | |
IPR023707 | Outer membrane protein assembly factor BamA | Family | |
IPR010653 | NlpB/DapX lipoprotein | Family | |
IPR042268 | Outer membrane protein assembly factor BamC, C-terminal | Homologous Superfamily | |
IPR014524 | Outer membrane protein assembly factor BamC | Family | |
IPR039565 | Outer membrane lipoprotein BamD-like | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR017689 | Outer membrane protein assembly factor BamD | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Omp85-TpsB transporters (n=16,S=20,22) | OMP insertion (Bam complex) porin (n=16,S=22) |