7RHQ
Cryo-EM structure of Xenopus Patched-1 in complex with GAS1 and Sonic Hedgehog
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Hedgehog/DD-peptidase | 8084197 | 3001458 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | HH_signal | e7rhqC1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: HH_signal | ECOD (1.6) |
C [auth G] | GDNF | e7rhqG1 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02460 | Patched family (Patched) | Patched family | - | Family | |
PF12349 | Sterol-sensing domain of SREBP cleavage-activation (Sterol-sensing) | Sterol-sensing domain of SREBP cleavage-activation | - | Family | |
B [auth C] | PF01085 | Hedgehog amino-terminal signalling domain (HH_signal) | Hedgehog amino-terminal signalling domain | For the carboxyl Hint module, see Pfam:PF01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. | Domain |
C [auth G] | PF02351 | GDNF/GAS1 domain (GDNF) | GDNF/GAS1 domain | This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Resistance-nodulation-cell division | Patched family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |