Crystal structure of nanoCLAMP3:VHH in complex with MTX
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G | APH | e7rgaG1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| F | APH | e7rgaF1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| E | APH | e7rgaE1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| D | APH | e7rgaD1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| C | APH | e7rgaC1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| B | APH | e7rgaB1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
| A | APH | e7rgaA1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: APH | ECOD (v294.1) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV1 | - | METHOTREXATE | SAbDab (2026-03-27) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| nano CLostridial Antibody Mimetic Protein 3 VHH |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002105 | Dockerin type I repeat | Repeat | |
| IPR016134 | Dockerin domain | Domain | |
| IPR051822 | Glycosyl Hydrolase Family 84 | Family | |
| IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR029018 | Beta-hexosaminidase-like, domain 2 | Homologous Superfamily | |
| IPR011496 | Beta-N-acetylglucosaminidase, catalytic domain | Domain | |
| IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
| IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
| IPR036439 | Dockerin domain superfamily | Homologous Superfamily | |
| IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
| IPR015882 | Beta-hexosaminidase, bacterial type, N-terminal | Domain | |
| IPR049019 | NagJ-like, helical domain | Domain |














