7R4X | pdb_00007r4x

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]Ribosomal_L30e7r4xB1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
DRibosomal_L30e7r4xD1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
ERibosomal_L30e7r4xE1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
G [auth H]Ribosomal_L30e7r4xH1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
H [auth I]Ribosomal_L30e7r4xI1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
J [auth L]Ribosomal_L30e7r4xL1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
N [auth S]Ribosomal_L30e7r4xS1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
P [auth U]Ribosomal_L30e7r4xU1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
Q [auth V]Ribosomal_L30e7r4xV1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
S [auth a]Ribosomal_L30e7r4xa1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
T [auth c]Ribosomal_L30e7r4xc1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
V [auth C]Ribosomal_L30e7r4xC1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
X [auth J]Ribosomal_L30e7r4xJ1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
Y [auth M]Ribosomal_L30e7r4xM1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
AA [auth O]Ribosomal_L30e7r4xO1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
CA [auth Y]Ribosomal_L30e7r4xY1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
DA [auth Z]Ribosomal_L30e7r4xZ1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
EA [auth b]Ribosomal_L30e7r4xb1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
FA [auth e]Ribosomal_L30e7r4xe1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
GA [auth f]Ribosomal_L30e7r4xf1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
HA [auth g]Ribosomal_L30e7r4xg1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
IA [auth A]Ribosomal_L30e7r4xA1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
I [auth K]Ribosomal_L30e7r4xK1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
FRibosomal_L30e7r4xF1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
BA [auth W]Ribosomal_L30e7r4xW1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
Z [auth N]Ribosomal_L30e7r4xN1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
W [auth G]Ribosomal_L30e7r4xG1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
U [auth d]Ribosomal_L30e7r4xd1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
R [auth X]Ribosomal_L30e7r4xX1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
O [auth T]Ribosomal_L30e7r4xT1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
M [auth R]Ribosomal_L30e7r4xR1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
L [auth Q]Ribosomal_L30e7r4xQ1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)
K [auth P]Ribosomal_L30e7r4xP1 A: alpha arraysX: cradle loop barrelH: Cytochrome P450T: Cytochrome P450F: Ribosomal_L30ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (utative)
CA [auth Y]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
F1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth n]60S ribosomal protein L41
B [auth 2]18S ribosomal RNA---
C [auth B]40S ribosomal protein S3a
40S ribosomal protein S3
40S ribosomal protein S4, X isoform
G [auth H]40S ribosomal protein S7
H [auth I]40S ribosomal protein S8
J [auth L]40S ribosomal protein S11
N [auth S]40S ribosomal protein S18
P [auth U]40S ribosomal protein S20
Q [auth V]40S ribosomal protein S21
S [auth a]40S ribosomal protein S26
T [auth c]40S ribosomal protein S28
V [auth C]40S ribosomal protein S2
X [auth J]40S ribosomal protein S9
Y [auth M]40S ribosomal protein S12
AA [auth O]40S ribosomal protein S14
CA [auth Y]40S ribosomal protein S24
DA [auth Z]40S ribosomal protein S25
EA [auth b]40S ribosomal protein S27
FA [auth e]40S ribosomal protein S30
GA [auth f]Ubiquitin-40S ribosomal protein S27a
HA [auth g]Receptor of activated protein C kinase 1
IA [auth A]40S ribosomal protein SA
I [auth K]40S ribosomal protein S10
40S ribosomal protein S5
BA [auth W]40S ribosomal protein S15a
Z [auth N]40S ribosomal protein S13
W [auth G]40S ribosomal protein S6
U [auth d]40S ribosomal protein S29
R [auth X]40S ribosomal protein S23
O [auth T]40S ribosomal protein S19
M [auth R]40S ribosomal protein S17
L [auth Q]40S ribosomal protein S16
K [auth P]40S ribosomal protein S15

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth n]IPR007836Large ribosomal subunit protein eS32Family
C [auth B]IPR001593Small ribosomal subunit protein eS1Family
C [auth B]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
C [auth B]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
IPR004044K Homology domain, type 2Domain
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR057258Small ribosomal subunit protein uS3Family
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
IPR013845Small ribosomal subunit protein eS4, central regionDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR000876Small ribosomal subunit protein eS4Family
IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005824KOWDomain
G [auth H]IPR000554Small ribosomal subunit protein eS7Family
G [auth H]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
H [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth I]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth I]IPR001047Small ribosomal subunit protein eS8Family
H [auth I]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
J [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
J [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
J [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth L]IPR000266Small ribosomal subunit protein uS17Family
J [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth S]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
N [auth S]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
N [auth S]IPR001892Small ribosomal subunit protein uS13Family
N [auth S]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
P [auth U]IPR027486Small ribosomal subunit protein uS10 domainDomain
P [auth U]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
P [auth U]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
P [auth U]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
P [auth U]IPR001848Small ribosomal subunit protein uS10Family
Q [auth V]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
Q [auth V]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
Q [auth V]IPR001931Small ribosomal subunit protein eS21Family
S [auth a]IPR047864Ribosomal protein eS26, conserved siteConserved Site
S [auth a]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
S [auth a]IPR000892Small ribosomal subunit protein eS26Family
T [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
T [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth c]IPR000289Small ribosomal subunit protein eS28Family
V [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
V [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
V [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
V [auth C]IPR000851Small ribosomal subunit protein uS5Family
V [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
V [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
X [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
X [auth J]IPR002942RNA-binding S4 domainDomain
X [auth J]IPR022801Small ribosomal subunit protein uS4Family
X [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
X [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
X [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
Y [auth M]IPR000530Small ribosomal subunit protein eS12Family
Y [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth M]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
Y [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth O]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
AA [auth O]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
AA [auth O]IPR001971Small ribosomal subunit protein uS11Family
CA [auth Y]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
CA [auth Y]IPR001976Small ribosomal subunit protein eS24Family
CA [auth Y]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
CA [auth Y]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
DA [auth Z]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth Z]IPR004977Small ribosomal subunit protein eS25Family
EA [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
EA [auth b]IPR000592Small ribosomal subunit protein eS27Family
EA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth e]IPR019954Ubiquitin conserved siteConserved Site
FA [auth e]IPR006846Small ribosomal subunit protein eS30Family
FA [auth e]IPR039415Ubiquitin-like protein FUBIDomain
FA [auth e]IPR000626Ubiquitin-like domainDomain
FA [auth e]IPR019956Ubiquitin domainDomain
FA [auth e]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth f]IPR019954Ubiquitin conserved siteConserved Site
GA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
GA [auth f]IPR050158Ubiquitin and ubiquitin-likeFamily
GA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth f]IPR000626Ubiquitin-like domainDomain
GA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
GA [auth f]IPR019956Ubiquitin domainDomain
GA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth g]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
HA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
HA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth g]IPR001680WD40 repeatRepeat
IA [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IA [auth A]IPR001865Small ribosomal subunit protein uS2Family
IA [auth A]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
IA [auth A]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
IA [auth A]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
IA [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IA [auth A]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
I [auth K]IPR037447Small ribosomal subunit protein eS10Family
I [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I [auth K]IPR005326Plectin/eS10, N-terminalDomain
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
BA [auth W]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
BA [auth W]IPR000630Small ribosomal subunit protein uS8Family
BA [auth W]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
Z [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Z [auth N]IPR000589Small ribosomal subunit protein uS15Family
Z [auth N]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
Z [auth N]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
W [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
W [auth G]IPR001377Small ribosomal subunit protein eS6Family
W [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily
U [auth d]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
U [auth d]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
U [auth d]IPR001209Small ribosomal subunit protein uS14Family
U [auth d]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
R [auth X]IPR006032Small ribosomal subunit protein uS12Family
R [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth X]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
O [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
O [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
O [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
O [auth T]IPR001266Small ribosomal subunit protein eS19Family
M [auth R]IPR001210Small ribosomal subunit protein eS17Family
M [auth R]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
M [auth R]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
L [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth Q]IPR000754Small ribosomal subunit protein uS9Family
L [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth P]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
K [auth P]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
K [auth P]IPR002222Small ribosomal subunit protein uS19Family
K [auth P]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth n]P62945
P23396
P62701
G [auth H]P62081
H [auth I]P62241
J [auth L]P62280
N [auth S]P62269
P [auth U]P60866
Q [auth V]P63220
S [auth a]P62854
T [auth c]P62857
V [auth C]P15880
X [auth J]P46781
Y [auth M]P25398
AA [auth O]P62263
CA [auth Y]P62847
DA [auth Z]P62851
EA [auth b]P42677
FA [auth e]P62861
GA [auth f]P62979
HA [auth g]P63244
IA [auth A]P08865
I [auth K]P46783
P46782
BA [auth W]P62244
Z [auth N]P62277
W [auth G]P62753
U [auth d]P62273
O [auth T]P39019
M [auth R]P08708
L [auth Q]P62249
K [auth P]P62841

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth 2]4AC Parent Component: C

B [auth 2]6MZ Parent Component: A

B [auth 2]7MG Parent Component: G

B [auth 2]A2M Parent Component: A

B [auth 2]B8N
B [auth 2]MA6 Parent Component: A

B [auth 2]OMC Parent Component: C

B [auth 2]OMG Parent Component: G

B [auth 2]OMU Parent Component: U

B [auth 2]PSU Parent Component: U

Q [auth V]AME Parent Component: MET

AA [auth O]IAS
IA [auth A]SAC Parent Component: SER

R [auth X]HY3 Parent Component: PRO

AA0029

:  3-hydroxy-L-proline MOD:00038