7QV7 | pdb_00007qv7

Cryo-EM structure of Hydrogen-dependent CO2 reductase.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth S]Molybdop_Fe4S4e7qv7S3 A: a+b two layersX: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)T: Formate dehydrogenase/DMSO reductase, domain 1F: Molybdop_Fe4S4ECOD (1.6)
L [auth S]Molybdopterin_2nde7qv7S1 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_2ndECOD (1.6)
L [auth S]Molybdopterin_1st_1e7qv7S2 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_1st_1ECOD (1.6)
O [auth Y]Molybdop_Fe4S4e7qv7Y3 A: a+b two layersX: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)T: Formate dehydrogenase/DMSO reductase, domain 1F: Molybdop_Fe4S4ECOD (1.6)
O [auth Y]Molybdopterin_2nde7qv7Y1 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_2ndECOD (1.6)
O [auth Y]Molybdopterin_1st_1e7qv7Y2 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_1st_1ECOD (1.6)
DFer4_21_1e7qv7D3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
DFe_hyd_lg_Ce7qv7D1 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
DFe_hyd_SSUe7qv7D2 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
G [auth K]Fer4_21_1e7qv7K3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
G [auth K]Fe_hyd_lg_Ce7qv7K2 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
G [auth K]Fe_hyd_SSUe7qv7K1 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
M [auth V]Fer4_21_1e7qv7V3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
M [auth V]Fe_hyd_lg_Ce7qv7V1 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
M [auth V]Fe_hyd_SSUe7qv7V2 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
P [auth Z]Fer4_21_1e7qv7Z3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
P [auth Z]Fe_hyd_lg_Ce7qv7Z2 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
P [auth Z]Fe_hyd_SSUe7qv7Z1 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
K [auth R]Fer4_21_1e7qv7R3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
K [auth R]Fe_hyd_lg_Ce7qv7R1 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
K [auth R]Fe_hyd_SSUe7qv7R2 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
J [auth Q]Fer4_21_1e7qv7Q3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
J [auth Q]Fe_hyd_lg_Ce7qv7Q1 A: a/b three-layered sandwichesX: Fe-only hydrogenase (From Topology)H: Fe-only hydrogenase (From Topology)T: Fe-only hydrogenaseF: Fe_hyd_lg_CECOD (1.6)
J [auth Q]Fe_hyd_SSUe7qv7Q2 A: extended segmentsX: Fe-only hydrogenase smaller subunit (From Topology)H: Fe-only hydrogenase smaller subunit (From Topology)T: Fe-only hydrogenase smaller subunitF: Fe_hyd_SSUECOD (1.6)
BFer4_11e7qv7B2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
BFer4_11_1e7qv7B1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
H [auth N]Fer4_11e7qv7N1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
H [auth N]Fer4_11_1e7qv7N2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
N [auth X]Fer4_11e7qv7X1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
N [auth X]Fer4_11_1e7qv7X2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
I [auth P]Fer4_11e7qv7P2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
I [auth P]Fer4_11_1e7qv7P1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
F [auth J]Fer4_11e7qv7J1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
F [auth J]Fer4_11_1e7qv7J2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
CFer4_11e7qv7C2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
CFer4_11_1e7qv7C1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
E [auth G]Fer4_11e7qv7G1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
E [auth G]Fer4_11_1e7qv7G2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)
AFer4_11e7qv7A1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11ECOD (1.6)
AFer4_11_1e7qv7A2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_11_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth S]3.40.228.10 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase domain 2CATH (utative)
O [auth Y]3.40.228.10 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase domain 2CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth S],
O [auth Y]
Hydrogen dependent carbon dioxide reductase subunit FdhF
Hydrogen dependent carbon dioxide reductase subunit HydA2 - -
Hydrogen dependent carbon dioxide reductase subunit HycB4 - -
A,
E [auth G]
Hydrogen dependent carbon dioxide reductase subunit HycB3 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth S],
O [auth Y]
IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
L [auth S],
O [auth Y]
IPR006657Molybdopterin dinucleotide-binding domainDomain
L [auth S],
O [auth Y]
IPR006656Molybdopterin oxidoreductaseDomain
L [auth S],
O [auth Y]
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
L [auth S],
O [auth Y]
IPR050123Prok_molybdopt-oxidoreductaseUnknown
L [auth S],
O [auth Y]
IPR041924Formate dehydrogenase H, N-terminalDomain
L [auth S],
O [auth Y]
IPR027467Molybdopterin oxidoreductase, molybdopterin cofactor binding siteBinding Site
L [auth S],
O [auth Y]
IPR041925Formate dehydrogenase H, molybdopterin-binding domainDomain
L [auth S],
O [auth Y]
IPR006478Formate dehydrogenase, alpha subunitFamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR004108Iron hydrogenase, large subunit, C-terminalDomain
IPR036991Iron hydrogenase, small subunit superfamilyHomologous Superfamily
IPR050340Cytosolic Fe-S Cluster Assembly FactorFamily
IPR009016Iron hydrogenaseHomologous Superfamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR013352Iron hydrogenase, subsetDomain
IPR003149Iron hydrogenase, small subunitDomain
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR050294Ion-translocating oxidoreductase complex subunit BFamily
A,
E [auth G]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
A,
E [auth G]
IPR050294Ion-translocating oxidoreductase complex subunit BFamily