7QRV | pdb_00007qrv

Crystal structure of NHL domain of TRIM2 (full C-terminal)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	tRNA-synt_2d	e7qrvD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.1)
C	tRNA-synt_2d	e7qrvC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.1)
B	tRNA-synt_2d	e7qrvB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.1)
A	tRNA-synt_2d	e7qrvA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01436	NHL repeat (NHL)	NHL repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Tripartite motif-containing protein 2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding ubiquitin-like protein ligase activity ubiquitin protein ligase activity	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process neuron apoptotic process protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process neuron apoptotic process regulation of cellular process regulation of apoptotic process biological regulation regulation of programmed cell death cell death apoptotic process programmed cell death regulation of neuron apoptotic process catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process response to peptide response to stimulus response to chemical response to cytokine response to leukemia inhibitory factor cellular response to cytokine stimulus cellular response to leukemia inhibitory factor	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A, B, C, D	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A, B, C, D	IPR001258	NHL repeat	Repeat
A, B, C, D	IPR050952	Tripartite Motif and NHL Repeat Containing E3 Ligases	Family
A, B, C, D	IPR000315	B-box-type zinc finger	Domain
A, B, C, D	IPR027370	Zinc finger, RING-type, eukaryotic	Domain
A, B, C, D	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, C, D	IPR017868	Filamin/ABP280 repeat-like	Repeat
A, B, C, D	IPR057750	Tripartite motif-containing protein 2/3, C-terminal domain	Domain
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR003649	B-box, C-terminal	Domain
A, B, C, D	IPR001841	Zinc finger, RING-type	Domain
A, B, C, D	IPR001298	Filamin/ABP280 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9C040	Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease type 2R peripheral neuropathy Osteoarthrosis Deformans pancreatic intraductal papillary-mucinous carcinoma peripheral nervous system disease pilocytic astrocytoma spina bifida atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant glioma motor peripheral neuropathy osteoarthritis osteosarcoma Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease type 2R peripheral neuropathy Osteoarthrosis Deformans pancreatic intraductal papillary-mucinous carcinoma peripheral nervous system disease pilocytic astrocytoma spina bifida atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant glioma motor peripheral neuropathy osteoarthritis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy ulcerative colitis breast cancer interstitial cystitis lung adenocarcinoma malignant mesothelioma neurodegenerative disease osteoarthritis susceptibility 1 ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Pick disease psoriasis breast carcinoma cystic fibrosis invasive ductal breast carcinoma lung carcinoma medulloblastoma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.