7QIA | pdb_00007qia

Structure of apo-EleNRMT in complex with two nanobodies at 3.5A


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ANrampe7qiaA1 A: alpha complex topologyX: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)T: Sodium:neurotransmitter symporter family (SNF)-likeF: NrampECOD (1.6)
B [auth C]V-set_8e7qiaC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
C [auth B]V-set_12e7qiaB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth C]Heavy ChainIGHV1 -divalent metal cation transporterSAbDab (2026-01-23)
C [auth B]Heavy ChainIGHV1 -divalent metal cation transporterSAbDab (2026-01-23)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01566Natural resistance-associated macrophage protein-like (Nramp)Natural resistance-associated macrophage protein-likeThe natural resistance-associated macrophage protein (NRAMP) family consists of animal NRAMP1, NRAMP2, yeast proteins Smf1 and Smf2 and bacterial homologues [6-8]. The NRAMP family includes functional related proteins defined by a conserved hydrophob ...The natural resistance-associated macrophage protein (NRAMP) family consists of animal NRAMP1, NRAMP2, yeast proteins Smf1 and Smf2 and bacterial homologues [6-8]. The NRAMP family includes functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains [5]. These membrane proteins are divalent cation transporters which have a high degree of sequence conservation, particularly, the residues contributing to ion interaction are stongly conserved (DPGN and MPH motifs) [6,7]. NRAMP1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis, where it plays an essential role in host defense against pathogens [1-6]. Mutations in NRAMP1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis [1]. NRAMP2 (DMT1) is a multiple divalent cation transporter broadly expressed in the duodenum, kidney, brain, testis and placenta. It transports Fe2+, Mn2+ and Cd+2, whereas Zn2+ is a poor substrate. Ca+2 and Mg+2 are not transported, which is important because their high concentrations in duodenum, where NRAMP2 is expressed at high levels, would interfere with the absorption of Fe2+ [6]. It is the major transferrin-independent iron uptake system in mammals [1,6]. NRAMP related members of this family have substrate specificity for Mn2+ and/or Mg2+, such as the yeast proteins Smf1 and Smf2 [3] and a group of bacterial transporters (NrmT, for Nramp-related magnesium transporter) [8].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001046NRAMP familyFamily